(16 nodes) Small GTPase superfamily, ARF/SAR type network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	arf-6	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family. (175 aa)
	CBG00631	Protein CBG00631. (127 aa)
	arl-1	Protein CBR-ARL-1; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	arc-1	Protein CBR-ARC-1. (543 aa)
	sar-1	Protein CBG01701; Belongs to the small GTPase superfamily. SAR1 family. (193 aa)
	CBG04196	Protein CBG04196. (191 aa)
	arf-1.1	Protein CBR-ARF-1.1. (195 aa)
	CBG09492	Protein CBG09492. (236 aa)
	arl-5	Protein CBR-ARL-5; Belongs to the small GTPase superfamily. Arf family. (177 aa)
	arl-3	Protein CBR-ARL-3; Belongs to the small GTPase superfamily. Arf family. (178 aa)
	arf-3	Protein CBR-ARF-3; Belongs to the small GTPase superfamily. Arf family. (180 aa)
	arl-8	Protein CBR-ARL-8; Belongs to the small GTPase superfamily. Arf family. (185 aa)
	arl-13	Protein CBR-ARL-13. (371 aa)
	arl-6	ADP-ribosylation factor-like protein 6. (190 aa)
	arf-1.2	ADP-ribosylation factor 1-like 2; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function (By similarity); Belongs to the small GTPase superfamily. Arf family. (181 aa)
	evl-20.1	ADP-ribosylation factor-like protein 2; GTP-binding protein that functions in embryogenesis, cytokinesis, germline development and microtubulule cytoskeleton dynamics; Belongs to the small GTPase superfamily. Arf family. (184 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG04196	arc-1	A8WWE3	A8WNZ8	Protein CBG04196.	Protein CBR-ARC-1.	0.423
CBG04196	arf-1.1	A8WWE3	A8X1B4	Protein CBG04196.	Protein CBR-ARF-1.1.	0.423
CBG04196	arf-1.2	A8WWE3	Q61LA8	Protein CBG04196.	ADP-ribosylation factor 1-like 2; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function (By similarity); Belongs to the small GTPase superfamily. Arf family.	0.423
CBG04196	arf-3	A8WWE3	A8XRF4	Protein CBG04196.	Protein CBR-ARF-3; Belongs to the small GTPase superfamily. Arf family.	0.423
CBG04196	arf-6	A8WWE3	A8WMU9	Protein CBG04196.	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	0.489
CBG04196	arl-1	A8WWE3	A8WNL4	Protein CBG04196.	Protein CBR-ARL-1; Belongs to the small GTPase superfamily. Arf family.	0.798
CBG04196	arl-13	A8WWE3	A8Y1E7	Protein CBG04196.	Protein CBR-ARL-13.	0.708
CBG04196	arl-3	A8WWE3	A8XCC6	Protein CBG04196.	Protein CBR-ARL-3; Belongs to the small GTPase superfamily. Arf family.	0.708
CBG04196	arl-5	A8WWE3	A8XA38	Protein CBG04196.	Protein CBR-ARL-5; Belongs to the small GTPase superfamily. Arf family.	0.423
CBG04196	arl-6	A8WWE3	Q60Z38	Protein CBG04196.	ADP-ribosylation factor-like protein 6.	0.423
CBG04196	arl-8	A8WWE3	A8Y0A3	Protein CBG04196.	Protein CBR-ARL-8; Belongs to the small GTPase superfamily. Arf family.	0.419
CBG09492	sar-1	A8X8Z8	A8WR19	Protein CBG09492.	Protein CBG01701; Belongs to the small GTPase superfamily. SAR1 family.	0.439
arc-1	CBG04196	A8WNZ8	A8WWE3	Protein CBR-ARC-1.	Protein CBG04196.	0.423
arf-1.1	CBG04196	A8X1B4	A8WWE3	Protein CBR-ARF-1.1.	Protein CBG04196.	0.423
arf-1.2	CBG04196	Q61LA8	A8WWE3	ADP-ribosylation factor 1-like 2; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function (By similarity); Belongs to the small GTPase superfamily. Arf family.	Protein CBG04196.	0.423
arf-1.2	arf-3	Q61LA8	A8XRF4	ADP-ribosylation factor 1-like 2; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function (By similarity); Belongs to the small GTPase superfamily. Arf family.	Protein CBR-ARF-3; Belongs to the small GTPase superfamily. Arf family.	0.926
arf-1.2	arf-6	Q61LA8	A8WMU9	ADP-ribosylation factor 1-like 2; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function (By similarity); Belongs to the small GTPase superfamily. Arf family.	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	0.911
arf-3	CBG04196	A8XRF4	A8WWE3	Protein CBR-ARF-3; Belongs to the small GTPase superfamily. Arf family.	Protein CBG04196.	0.423
arf-3	arf-1.2	A8XRF4	Q61LA8	Protein CBR-ARF-3; Belongs to the small GTPase superfamily. Arf family.	ADP-ribosylation factor 1-like 2; GTP-binding protein involved in protein trafficking; may modulate vesicle budding and uncoating within the Golgi apparatus. Involved in endoplasmic reticulum dynamics during embryogenesis. Also required for adult germline function (By similarity); Belongs to the small GTPase superfamily. Arf family.	0.926
arf-3	arf-6	A8XRF4	A8WMU9	Protein CBR-ARF-3; Belongs to the small GTPase superfamily. Arf family.	Protein CBR-ARF-6; Belongs to the small GTPase superfamily. Arf family.	0.911