STRINGSTRING
dpy-23 dpy-23 CBG21319 CBG21319 trpp-4 trpp-4 ykt-6 ykt-6 copd-1 copd-1 aps-2 aps-2 CBG13942 CBG13942 apm-1 apm-1 aps-1 aps-1 unc-101 unc-101 aps-3 aps-3 sedl-1 sedl-1 apm-3 apm-3 sec-22 sec-22 Cbr-lec-12 Cbr-lec-12 orc-2 orc-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
dpy-23Protein CBR-DPY-23; Belongs to the adaptor complexes medium subunit family. (435 aa)
CBG21319Protein CBG21319. (137 aa)
trpp-4Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (177 aa)
ykt-6Protein CBR-YKT-6; Belongs to the synaptobrevin family. (201 aa)
copd-1Coatomer subunit delta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. (514 aa)
aps-2AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (142 aa)
CBG13942Protein CBG13942. (608 aa)
apm-1Protein CBR-APM-1; Belongs to the adaptor complexes medium subunit family. (411 aa)
aps-1AP complex subunit sigma; Belongs to the adaptor complexes small subunit family. (177 aa)
unc-101Protein CBG08724; Belongs to the adaptor complexes medium subunit family. (422 aa)
aps-3Protein CBR-APS-3. (192 aa)
sedl-1Protein CBR-SEDL-1. (141 aa)
apm-3Protein CBR-APM-3; Belongs to the adaptor complexes medium subunit family. (344 aa)
sec-22Protein CBR-SEC-22; Belongs to the synaptobrevin family. (214 aa)
Cbr-lec-12Galectin. (498 aa)
orc-2Protein CBR-ORC-2. (544 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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