(14 nodes) GroES-like superfamily network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rad-8	Protein CBR-RAD-8. (366 aa)
	CBG03002	Protein CBG03002. (361 aa)
	mecr-1	Protein CBR-MECR-1. (344 aa)
	CBG02813	Protein CBG02813. (349 aa)
	CBG06201	Protein CBG06201. (352 aa)
	CBG08607	Protein CBG08607. (347 aa)
	CBG08605	Protein CBG08605. (264 aa)
	CBG11702	Protein CBG11702; Belongs to the GroES chaperonin family. (108 aa)
	fasn-1	Protein CBR-FASN-1. (2731 aa)
	CBG17892	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily. (384 aa)
	CBG18225	Protein CBG18225. (345 aa)
	CBG19709	Protein CBG19709. (324 aa)
	sodh-1	Protein CBR-SODH-1. (349 aa)
	CBG23238	Protein CBG23238. (294 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02813	CBG03002	A8WTG3	A8WT09	Protein CBG02813.	Protein CBG03002.	0.436
CBG02813	CBG17892	A8WTG3	A8XS15	Protein CBG02813.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.412
CBG02813	CBG18225	A8WTG3	A8XS68	Protein CBG02813.	Protein CBG18225.	0.905
CBG02813	fasn-1	A8WTG3	A8XFD1	Protein CBG02813.	Protein CBR-FASN-1.	0.959
CBG02813	mecr-1	A8WTG3	A8WTG2	Protein CBG02813.	Protein CBR-MECR-1.	0.902
CBG02813	rad-8	A8WTG3	A8XFT0	Protein CBG02813.	Protein CBR-RAD-8.	0.416
CBG03002	CBG02813	A8WT09	A8WTG3	Protein CBG03002.	Protein CBG02813.	0.436
CBG03002	CBG17892	A8WT09	A8XS15	Protein CBG03002.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.422
CBG03002	CBG18225	A8WT09	A8XS68	Protein CBG03002.	Protein CBG18225.	0.436
CBG03002	mecr-1	A8WT09	A8WTG2	Protein CBG03002.	Protein CBR-MECR-1.	0.436
CBG06201	CBG17892	A8X0N9	A8XS15	Protein CBG06201.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.482
CBG06201	fasn-1	A8X0N9	A8XFD1	Protein CBG06201.	Protein CBR-FASN-1.	0.670
CBG06201	sodh-1	A8X0N9	A8Y4D9	Protein CBG06201.	Protein CBR-SODH-1.	0.420
CBG08605	CBG11702	A8X706	A8XDX5	Protein CBG08605.	Protein CBG11702; Belongs to the GroES chaperonin family.	0.425
CBG08605	CBG17892	A8X706	A8XS15	Protein CBG08605.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.535
CBG08605	CBG23238	A8X706	A8Y4E0	Protein CBG08605.	Protein CBG23238.	0.602
CBG08605	sodh-1	A8X706	A8Y4D9	Protein CBG08605.	Protein CBR-SODH-1.	0.623
CBG08607	CBG11702	A8X705	A8XDX5	Protein CBG08607.	Protein CBG11702; Belongs to the GroES chaperonin family.	0.425
CBG08607	CBG17892	A8X705	A8XS15	Protein CBG08607.	S-(hydroxymethyl)glutathione dehydrogenase; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.	0.535
CBG08607	CBG23238	A8X705	A8Y4E0	Protein CBG08607.	Protein CBG23238.	0.602