(43 nodes) ABC transporter type 1, transmembrane domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG25498	Protein CBG25498. (1295 aa)
	pgp-10	Protein CBR-PGP-10. (1313 aa)
	CBG24505	Protein CBG24505. (499 aa)
	cft-1	Protein CBR-CFT-1. (1272 aa)
	haf-6	Protein CBR-HAF-6. (605 aa)
	pmp-4	Protein CBR-PMP-4. (747 aa)
	mrp-8	Protein CBR-MRP-8. (1125 aa)
	pgp-12	Protein CBR-PGP-12. (1360 aa)
	pgp-13	Protein CBR-PGP-13. (1334 aa)
	pgp-14	Protein CBR-PGP-14. (1371 aa)
	CBG00078	Protein CBG00078. (1348 aa)
	CBG24214	Protein CBG24214. (1130 aa)
	haf-3	Protein CBR-HAF-3. (863 aa)
	mrp-7	Protein CBG23578. (924 aa)
	haf-1	Protein CBR-HAF-1. (699 aa)
	mrp-4	Protein CBR-MRP-4. (1581 aa)
	abtm-1	Protein CBR-ABTM-1. (878 aa)
	pgp-2	Protein CBR-PGP-2. (1305 aa)
	pmp-3	Protein CBR-PMP-3. (660 aa)
	pgp-9	Protein CBR-PGP-9. (1348 aa)
	mrp-5	Protein CBR-MRP-5. (1439 aa)
	mrp-1	Protein CBR-MRP-1. (1726 aa)
	mrp-2	Protein CBR-MRP-2. (1578 aa)
	haf-9	Protein CBR-HAF-9. (825 aa)
	CBG20250	Protein CBG20250. (141 aa)
	pmp-5	Protein CBR-PMP-5. (599 aa)
	CBG17574	Protein CBG17574. (1628 aa)
	pgp-8	Protein CBR-PGP-8. (1525 aa)
	Cbr-pgp-7	Protein CBR-PGP-7. (1271 aa)
	CBG08354	Protein CBG08354. (1559 aa)
	pgp-3	Protein CBR-PGP-3. (1298 aa)
	pgp-4	Protein CBR-PGP-4. (1402 aa)
	mrp-3	Protein CBR-MRP-3. (1500 aa)
	mrp-6	Protein CBR-MRP-6. (1332 aa)
	pgp-1	Protein CBR-PGP-1. (1319 aa)
	pgp-11	Protein CBR-PGP-11. (1209 aa)
	hmt-1	Protein CBR-HMT-1. (700 aa)
	haf-2	Protein CBR-HAF-2. (793 aa)
	CBG12969	Protein CBG12969. (1231 aa)
	haf-7	Protein CBR-HAF-7. (806 aa)
	pmp-2	Protein CBR-PMP-2. (662 aa)
	CBG21809	Protein CBG21809. (785 aa)
	haf-4	Protein CBR-HAF-4. (843 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG12969	mrp-1	A8XGS7	A8X5X3	Protein CBG12969.	Protein CBR-MRP-1.	0.451
CBG12969	mrp-3	A8XGS7	A8XNB9	Protein CBG12969.	Protein CBR-MRP-3.	0.503
CBG20250	abtm-1	A8XXE4	A8WVX6	Protein CBG20250.	Protein CBR-ABTM-1.	0.465
CBG20250	haf-4	A8XXE4	A8Y2T8	Protein CBG20250.	Protein CBR-HAF-4.	0.583
CBG21809	abtm-1	A8Y0V2	A8WVX6	Protein CBG21809.	Protein CBR-ABTM-1.	0.504
CBG21809	haf-7	A8Y0V2	A8XDM5	Protein CBG21809.	Protein CBR-HAF-7.	0.900
CBG21809	haf-9	A8Y0V2	A8XXF1	Protein CBG21809.	Protein CBR-HAF-9.	0.934
CBG24214	abtm-1	A8WK83	A8WVX6	Protein CBG24214.	Protein CBR-ABTM-1.	0.498
CBG24505	mrp-7	H8WH57	A8WIV6	Protein CBG24505.	Protein CBG23578.	0.979
abtm-1	CBG20250	A8WVX6	A8XXE4	Protein CBR-ABTM-1.	Protein CBG20250.	0.465
abtm-1	CBG21809	A8WVX6	A8Y0V2	Protein CBR-ABTM-1.	Protein CBG21809.	0.504
abtm-1	CBG24214	A8WVX6	A8WK83	Protein CBR-ABTM-1.	Protein CBG24214.	0.498
abtm-1	haf-1	A8WVX6	A8WN03	Protein CBR-ABTM-1.	Protein CBR-HAF-1.	0.506
abtm-1	haf-2	A8WVX6	A8XH60	Protein CBR-ABTM-1.	Protein CBR-HAF-2.	0.499
abtm-1	haf-3	A8WVX6	A8WJQ6	Protein CBR-ABTM-1.	Protein CBR-HAF-3.	0.504
abtm-1	haf-4	A8WVX6	A8Y2T8	Protein CBR-ABTM-1.	Protein CBR-HAF-4.	0.500
abtm-1	haf-6	A8WVX6	A8X6P9	Protein CBR-ABTM-1.	Protein CBR-HAF-6.	0.611
abtm-1	haf-7	A8WVX6	A8XDM5	Protein CBR-ABTM-1.	Protein CBR-HAF-7.	0.503
abtm-1	haf-9	A8WVX6	A8XXF1	Protein CBR-ABTM-1.	Protein CBR-HAF-9.	0.499
abtm-1	mrp-5	A8WVX6	A8X4C6	Protein CBR-ABTM-1.	Protein CBR-MRP-5.	0.497