(54 nodes) DEAD/DEAH box helicase domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	helq-1	Protein CBG15258. (913 aa)
	CBG24191	Putative ATP-dependent DNA helicase Q1; DNA helicase that may play a role in the repair of DNA that is damaged by ultraviolet light or other mutagens. Exhibits a magnesium-dependent ATP-dependent DNA-helicase activity that unwinds single- and double-stranded DNA in a 3'-5' direction (By similarity). (618 aa)
	CBG00032	Protein CBG00032; Belongs to the DEAD box helicase family. (664 aa)
	hel-1	Protein CBR-HEL-1. (424 aa)
	ddx-19	Protein CBG03203. (1095 aa)
	Cbr-rha-1	Protein CBR-RHA-1. (1402 aa)
	wrn-1	Protein CBR-WRN-1. (1061 aa)
	mog-5	Protein CBR-MOG-5. (1220 aa)
	mtr-4	Protein CBR-MTR-4. (1024 aa)
	CBG03667	Protein CBG03667; Belongs to the DEAD box helicase family. (565 aa)
	CBG03992	RNA helicase. (750 aa)
	CBG04018	Protein CBG04018; Belongs to the DEAD box helicase family. (393 aa)
	CBG04082	Protein CBG04082. (1269 aa)
	vbh-1	Protein CBR-VBH-1; Belongs to the DEAD box helicase family. (692 aa)
	CBG04253	Protein CBG04253. (2026 aa)
	CBG05145	Protein CBG05145; Belongs to the DEAD box helicase family. (400 aa)
	CBG05399	Protein CBG05399. (438 aa)
	skih-2	Protein CBR-SKIH-2. (1286 aa)
	CBG07062	Protein CBG07062. (626 aa)
	snrp-200	Protein CBG07909. (2145 aa)
	drh-3	Protein CBR-DRH-3. (846 aa)
	smgl-2	Protein CBR-SMGL-2. (1021 aa)
	CBG09086	Protein CBG09086. (370 aa)
	ddx-23	Protein CBG09074; Belongs to the DEAD box helicase family. (747 aa)
	CBG09045	Protein CBG09045. (1737 aa)
	ddx-15	Protein CBG08977. (754 aa)
	cgh-1	Protein CBR-CGH-1; Belongs to the DEAD box helicase family. (429 aa)
	mut-14	Protein CBR-MUT-14; Belongs to the DEAD box helicase family. (527 aa)
	CBG09775	Protein CBG09775. (820 aa)
	laf-1	Protein CBR-LAF-1; Belongs to the DEAD box helicase family. (653 aa)
	mog-1	Protein CBR-MOG-1. (990 aa)
	CBG10097	Protein CBG10097; Belongs to the DEAD box helicase family. (486 aa)
	rde-12	Protein CBG11510. (1248 aa)
	ddx-17	Protein CBG11408; Belongs to the DEAD box helicase family. (559 aa)
	glh-4	Protein CBR-GLH-4. (1192 aa)
	CBG12465	RNA helicase. (542 aa)
	glh-1	Protein CBR-GLH-1. (817 aa)
	let-355	Protein CBG12480. (859 aa)
	ddx-52	Protein CBG12508. (589 aa)
	sacy-1	Protein CBG12746; Belongs to the DEAD box helicase family. (631 aa)
	mel-46	Protein CBR-MEL-46. (995 aa)
	CBG13978	Protein CBG13978. (727 aa)
	CBG13909	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (835 aa)
	CBG14924	Protein CBG14924. (357 aa)
	CBG14925	Protein CBG14925. (456 aa)
	CBG14927	Protein CBG14927. (372 aa)
	rha-2	Protein CBR-RHA-2. (1170 aa)
	inf-1	Protein CBR-INF-1; Belongs to the DEAD box helicase family. (402 aa)
	CBG16678	Protein CBG16678. (1000 aa)
	rcq-5	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (831 aa)
	CBG20666	Protein CBG20666; Belongs to the DEAD box helicase family. (502 aa)
	him-6	Protein CBR-HIM-6. (1005 aa)
	ddx-27	Protein CBG22166; Belongs to the DEAD box helicase family. (753 aa)
	CBG06798	Probable ATP-dependent RNA helicase DDX55 homolog; Probable ATP-binding RNA helicase. (577 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00032	CBG03667	A8WM63	A8WVJ8	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG03667; Belongs to the DEAD box helicase family.	0.569
CBG00032	CBG03992	A8WM63	A8WVX9	Protein CBG00032; Belongs to the DEAD box helicase family.	RNA helicase.	0.673
CBG00032	CBG04018	A8WM63	A8WW00	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG04018; Belongs to the DEAD box helicase family.	0.602
CBG00032	CBG04082	A8WM63	A8WW62	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG04082.	0.417
CBG00032	CBG05145	A8WM63	A8WZ62	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG05145; Belongs to the DEAD box helicase family.	0.454
CBG00032	CBG06798	A8WM63	Q61R02	Protein CBG00032; Belongs to the DEAD box helicase family.	Probable ATP-dependent RNA helicase DDX55 homolog; Probable ATP-binding RNA helicase.	0.612
CBG00032	CBG07062	A8WM63	A8X3S9	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG07062.	0.832
CBG00032	CBG10097	A8WM63	A8XAD8	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG10097; Belongs to the DEAD box helicase family.	0.778
CBG00032	CBG12465	A8WM63	A8XFI0	Protein CBG00032; Belongs to the DEAD box helicase family.	RNA helicase.	0.823
CBG00032	CBG13909	A8WM63	A8XJ22	Protein CBG00032; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.	0.697
CBG00032	CBG14924	A8WM63	A8XL04	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG14924.	0.662
CBG00032	CBG14925	A8WM63	A8XL05	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG14925.	0.651
CBG00032	CBG14927	A8WM63	A8XL07	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG14927.	0.627
CBG00032	ddx-15	A8WM63	A8X837	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG08977.	0.840
CBG00032	ddx-17	A8WM63	A8XD35	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG11408; Belongs to the DEAD box helicase family.	0.523
CBG00032	ddx-27	A8WM63	A8Y1P8	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG22166; Belongs to the DEAD box helicase family.	0.582
CBG00032	ddx-52	A8WM63	A8XFX7	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG12508.	0.828
CBG00032	let-355	A8WM63	A8XFV1	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBG12480.	0.841
CBG00032	mog-5	A8WM63	A8WUF8	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBR-MOG-5.	0.642
CBG00032	mtr-4	A8WM63	A8WV55	Protein CBG00032; Belongs to the DEAD box helicase family.	Protein CBR-MTR-4.	0.801