(103 nodes) Major facilitator superfamily network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG09321	Protein CBG09321. (820 aa)
	slc-17.2	Protein CBG10101. (494 aa)
	CBG11239	Protein CBG11239. (468 aa)
	CBG11509	Protein CBG11509. (464 aa)
	CBG11431	Protein CBG11431. (482 aa)
	slc-17.5	Protein CBG11300. (533 aa)
	CBG12162	Protein CBG12162. (375 aa)
	CBG12164	Protein CBG12164. (457 aa)
	CBG12165	Protein CBG12165. (458 aa)
	CBG12247	Protein CBG12247. (593 aa)
	slc-17.3	Protein CBG12249. (507 aa)
	CBG12481	Protein CBG12481. (591 aa)
	CBG13412	Protein CBG13412. (467 aa)
	CBG14511	Protein CBG14511. (481 aa)
	mct-4	Protein CBR-PES-22. (783 aa)
	cat-1	Protein CBR-CAT-1. (554 aa)
	CBG15279	Protein CBG15279. (506 aa)
	CBG15681	Protein CBG15681. (513 aa)
	slc-17.9	Protein CBG16009. (517 aa)
	CBG15936	Protein CBG15936. (446 aa)
	mct-6	Protein CBG16244. (592 aa)
	CBG16171	Protein CBG16171. (504 aa)
	CBG16461	Protein CBG16461. (204 aa)
	CBG16758	Protein CBG16758. (498 aa)
	CBG17619	Protein CBG17619. (514 aa)
	CBG17618	Protein CBG17618. (474 aa)
	CBG17617	Protein CBG17617. (497 aa)
	CBG17895	Protein CBG17895. (468 aa)
	CBG18912	Protein CBG18912. (489 aa)
	CBG18913	Protein CBG18913. (473 aa)
	CBG18995	Protein CBG18995. (467 aa)
	slc-17.7	Protein CBG19243. (578 aa)
	CBG19357	Protein CBG19357. (585 aa)
	CBG19966	Protein CBG19966. (476 aa)
	CBG19968	Protein CBG19968. (829 aa)
	CBG19969	Protein CBG19969. (469 aa)
	CBG20031	Protein CBG20031. (523 aa)
	CBG20085	Protein CBG20085. (463 aa)
	CBG20625	Protein CBG20625. (504 aa)
	CBG20860	Protein CBG20860. (346 aa)
	CBG20861	Protein CBG20861. (500 aa)
	CBG21733	Protein CBG21733. (414 aa)
	CBG21726	Protein CBG21726. (566 aa)
	CBG22168	Protein CBG22168. (428 aa)
	CBG22645	Protein CBG22645. (454 aa)
	CBG23780	Protein CBG23780. (467 aa)
	CBG23388	Protein CBG23388. (482 aa)
	spin-1	Protein CBG23385. (539 aa)
	CBG23364	Protein CBG23364. (458 aa)
	CBG23285	Protein CBG23285. (479 aa)
	CBG11241	Protein CBG11241. (449 aa)
	CBG25180	Protein CBG25180. (245 aa)
	CBG27003	Protein CBG27003. (203 aa)
	CBG22670	Protein CBG22670. (441 aa)
	vglu-2	Protein CBR-VGLU-3. (576 aa)
	CBG24628	Protein CBG24628. (405 aa)
	CBG00364	Protein CBG00364. (502 aa)
	slc-17.4	Protein CBG00377. (571 aa)
	CBG01018	Protein CBG01018. (520 aa)
	vnut-1	Protein CBR-VNUT-1. (446 aa)
	CBG00943	Protein CBG00943. (631 aa)
	CBG01115	Protein CBG01115. (480 aa)
	mct-1	Protein CBG01116. (530 aa)
	CBG01117	Protein CBG01117. (477 aa)
	CBG01118	Protein CBG01118. (443 aa)
	CBG01182	Protein CBG01182. (443 aa)
	slc-17.8	Protein CBG01496. (513 aa)
	CBG01833	Protein CBG01833. (497 aa)
	spin-2	Protein CBG01831. (488 aa)
	slc-17.1	Protein CBG01860. (474 aa)
	CBG03300	Protein CBG03300. (636 aa)
	CBG03118	Protein CBG03118. (492 aa)
	CBG02699	Protein CBG02699. (350 aa)
	CBG03421	Protein CBG03421. (484 aa)
	spin-4	Protein CBG03564. (567 aa)
	Cbr-lgc-51	Protein CBR-LGC-51; Belongs to the ligand-gated ion channel (TC 1.A.9) family. (1025 aa)
	CBG04430	Protein CBG04430. (434 aa)
	CBG04458	Protein CBG04458. (475 aa)
	slcf-1	Protein CBR-SLCF-1. (450 aa)
	CBG04634	Protein CBG04634. (442 aa)
	CBG04675	Protein CBG04675. (501 aa)
	CBG04728	Protein CBG04728. (326 aa)
	CBG04877	Protein CBG04877. (518 aa)
	spin-3	Protein CBG05238. (483 aa)
	CBG05546	Protein CBG05546. (505 aa)
	CBG05646	Protein CBG05646. (459 aa)
	CBG05657	Protein CBG05657. (566 aa)
	hpo-12	Protein CBR-HPO-12; Belongs to the mitochondrial carrier (TC 2.A.29) family. (648 aa)
	CBG06173	Protein CBG06173. (517 aa)
	cima-1	Protein CBG05932. (544 aa)
	CBG06591	Protein CBG06591. (506 aa)
	eat-4	Protein CBR-EAT-4. (582 aa)
	CBG06794	Protein CBG06794. (204 aa)
	CBG06976	Protein CBG06976. (581 aa)
	gem-1	Protein CBG07785. (776 aa)
	CBG07740	Protein CBG07740. (506 aa)
	CBG07685	Protein CBG07685. (473 aa)
	CBG07580	Protein CBG07580. (448 aa)
	mct-3	Protein CBG07361. (621 aa)
	CBG08069	Protein CBG08069. (714 aa)
	CBG08609	Protein CBG08609. (486 aa)
	CBG08551	Protein CBG08551. (443 aa)
	CBG09596	Protein CBG09596. (454 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00364	spin-3	A8WMX1	A8WZG3	Protein CBG00364.	Protein CBG05238.	0.550
CBG01018	vnut-1	A8WP36	A8WP62	Protein CBG01018.	Protein CBR-VNUT-1.	0.451
CBG01115	CBG07740	A8WPL2	A8X467	Protein CBG01115.	Protein CBG07740.	0.631
CBG01115	CBG08551	A8WPL2	A8X753	Protein CBG01115.	Protein CBG08551.	0.605
CBG01115	CBG16758	A8WPL2	A8XPR6	Protein CBG01115.	Protein CBG16758.	0.654
CBG01115	slc-17.9	A8WPL2	A8XNA4	Protein CBG01115.	Protein CBG16009.	0.591
CBG01115	vnut-1	A8WPL2	A8WP62	Protein CBG01115.	Protein CBR-VNUT-1.	0.468
CBG01117	mct-1	A8WPL4	A8WPL3	Protein CBG01117.	Protein CBG01116.	0.453
CBG01117	vnut-1	A8WPL4	A8WP62	Protein CBG01117.	Protein CBR-VNUT-1.	0.459
CBG02699	slc-17.9	A8WTQ4	A8XNA4	Protein CBG02699.	Protein CBG16009.	0.471
CBG02699	vglu-2	A8WTQ4	A8WL29	Protein CBG02699.	Protein CBR-VGLU-3.	0.441
CBG03118	vnut-1	A8WSR2	A8WP62	Protein CBG03118.	Protein CBR-VNUT-1.	0.452
CBG04430	eat-4	A8WXI8	A8X331	Protein CBG04430.	Protein CBR-EAT-4.	0.401
CBG04430	slc-17.9	A8WXI8	A8XNA4	Protein CBG04430.	Protein CBG16009.	0.435
CBG04430	vglu-2	A8WXI8	A8WL29	Protein CBG04430.	Protein CBR-VGLU-3.	0.436
CBG04675	spin-3	A8WY74	A8WZG3	Protein CBG04675.	Protein CBG05238.	0.790
CBG04728	slc-17.5	A8WYB8	A8XDC3	Protein CBG04728.	Protein CBG11300.	0.447
CBG04728	slc-17.9	A8WYB8	A8XNA4	Protein CBG04728.	Protein CBG16009.	0.460
CBG04728	vglu-2	A8WYB8	A8WL29	Protein CBG04728.	Protein CBR-VGLU-3.	0.438
CBG05546	vnut-1	A8X045	A8WP62	Protein CBG05546.	Protein CBR-VNUT-1.	0.448