(21 nodes) Chromo domain network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG05277	Protein CBG05277. (924 aa)
	hpl-1	Protein CBG05267. (216 aa)
	cec-3	Protein CBR-CEC-3. (339 aa)
	CBG24106	Protein CBG24106. (179 aa)
	CBG24082	Protein CBG24082. (278 aa)
	CBG12076	Protein CBG12076. (496 aa)
	cec-8	Protein CBR-CEC-8. (631 aa)
	CBG13888	Protein CBG13888. (122 aa)
	CBG15981	Protein CBG15981. (508 aa)
	hpl-2	Protein CBR-HPL-2. (305 aa)
	cec-1	Protein CBR-CEC-1. (321 aa)
	cec-6	Protein CBG19921. (1702 aa)
	chd-7	Protein CBR-TAG-192. (2927 aa)
	CBG26659	Protein CBG26659. (341 aa)
	CBG26613	Protein CBG26613. (336 aa)
	CBG07229	Protein CBG07229. (411 aa)
	chd-1	Protein CBR-CHD-1. (1465 aa)
	CBG10226	Protein CBG10226. (806 aa)
	let-418	Protein CBR-LET-418. (1863 aa)
	cec-4	Protein CBR-CEC-4. (311 aa)
	cec-5	Protein CBR-CEC-5. (398 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG07229	let-418	G2J6L2	A8X9E2	Protein CBG07229.	Protein CBR-LET-418.	0.446
CBG10226	let-418	A8XAT4	A8X9E2	Protein CBG10226.	Protein CBR-LET-418.	0.604
CBG13888	cec-1	A8XJ41	A8XT38	Protein CBG13888.	Protein CBR-CEC-1.	0.477
CBG24082	let-418	A8WJY1	A8X9E2	Protein CBG24082.	Protein CBR-LET-418.	0.519
cec-1	CBG13888	A8XT38	A8XJ41	Protein CBR-CEC-1.	Protein CBG13888.	0.477
cec-3	cec-4	A8WSC1	A8X1C5	Protein CBR-CEC-3.	Protein CBR-CEC-4.	0.669
cec-3	cec-6	A8WSC1	A8XWR1	Protein CBR-CEC-3.	Protein CBG19921.	0.744
cec-3	hpl-2	A8WSC1	A8XSE7	Protein CBR-CEC-3.	Protein CBR-HPL-2.	0.632
cec-3	let-418	A8WSC1	A8X9E2	Protein CBR-CEC-3.	Protein CBR-LET-418.	0.604
cec-4	cec-3	A8X1C5	A8WSC1	Protein CBR-CEC-4.	Protein CBR-CEC-3.	0.669
cec-4	hpl-2	A8X1C5	A8XSE7	Protein CBR-CEC-4.	Protein CBR-HPL-2.	0.739
cec-4	let-418	A8X1C5	A8X9E2	Protein CBR-CEC-4.	Protein CBR-LET-418.	0.523
cec-5	cec-6	A8X1C3	A8XWR1	Protein CBR-CEC-5.	Protein CBG19921.	0.708
cec-5	hpl-2	A8X1C3	A8XSE7	Protein CBR-CEC-5.	Protein CBR-HPL-2.	0.564
cec-5	let-418	A8X1C3	A8X9E2	Protein CBR-CEC-5.	Protein CBR-LET-418.	0.526
cec-6	cec-3	A8XWR1	A8WSC1	Protein CBG19921.	Protein CBR-CEC-3.	0.744
cec-6	cec-5	A8XWR1	A8X1C3	Protein CBG19921.	Protein CBR-CEC-5.	0.708
cec-6	let-418	A8XWR1	A8X9E2	Protein CBG19921.	Protein CBR-LET-418.	0.604
cec-8	let-418	A8XIH0	A8X9E2	Protein CBR-CEC-8.	Protein CBR-LET-418.	0.523
chd-1	chd-7	A8XBT1	A8Y205	Protein CBR-CHD-1.	Protein CBR-TAG-192.	0.438