(28 nodes) AH/BAR domain superfamily network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG03833	Protein CBG03833. (199 aa)
	CBG03954	Protein CBG03954. (612 aa)
	snx-1	Protein CBR-SNX-1. (472 aa)
	CBG03621	Protein CBG03621. (549 aa)
	spv-1	Protein CBR-TAG-341. (855 aa)
	CBG12489	Protein CBG12489. (251 aa)
	Cbr-erp-1	Protein CBR-ERP-1. (366 aa)
	rga-8	Protein CBG14650. (666 aa)
	toca-1	Protein CBR-TOCA-1. (588 aa)
	sdpn-1	Protein CBR-SDPN-1. (485 aa)
	toca-2	Protein CBR-TOCA-2. (677 aa)
	lst-4	Sorting nexin; Belongs to the sorting nexin family. (595 aa)
	amph-1	Protein CBR-AMPH-1. (482 aa)
	cnt-1	Protein CBR-CNT-1. (824 aa)
	CBG21499	Protein CBG21499. (446 aa)
	unc-57	Protein CBR-UNC-57. (375 aa)
	CBG22463	Protein CBG22463. (1576 aa)
	snx-6	Protein CBR-SNX-6. (838 aa)
	ric-19	Protein CBR-RIC-19. (435 aa)
	CBG10089	Protein CBG10089. (291 aa)
	CBG09025	Protein CBG09025. (934 aa)
	CBG08460	Protein CBG08460. (222 aa)
	CBG07900	Protein CBG07900. (409 aa)
	fcho-1	Protein CBG07108. (969 aa)
	CBG05933	Protein CBG05933. (297 aa)
	srgp-1	Protein CBR-SRGP-1. (1060 aa)
	CBG04867	Protein CBG04867. (263 aa)
	CBG03836	Protein CBG03836. (304 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG05933	CBG12489	A8X1A8	A8XFW0	Protein CBG05933.	Protein CBG12489.	0.478
CBG07900	amph-1	A8X5D1	A8XX10	Protein CBG07900.	Protein CBR-AMPH-1.	0.659
CBG07900	lst-4	A8X5D1	A8XU32	Protein CBG07900.	Sorting nexin; Belongs to the sorting nexin family.	0.743
CBG07900	snx-1	A8X5D1	A8WVN0	Protein CBG07900.	Protein CBR-SNX-1.	0.906
CBG07900	snx-6	A8X5D1	E3CTY4	Protein CBG07900.	Protein CBR-SNX-6.	0.980
CBG07900	unc-57	A8X5D1	A8Y200	Protein CBG07900.	Protein CBR-UNC-57.	0.548
CBG10089	ric-19	A8XAD1	A8XEB3	Protein CBG10089.	Protein CBR-RIC-19.	0.640
CBG12489	CBG05933	A8XFW0	A8X1A8	Protein CBG12489.	Protein CBG05933.	0.478
CBG21499	ric-19	A8Y096	A8XEB3	Protein CBG21499.	Protein CBR-RIC-19.	0.685
CBG22463	amph-1	A8Y2C4	A8XX10	Protein CBG22463.	Protein CBR-AMPH-1.	0.973
Cbr-erp-1	amph-1	A8XJP4	A8XX10	Protein CBR-ERP-1.	Protein CBR-AMPH-1.	0.530
amph-1	CBG07900	A8XX10	A8X5D1	Protein CBR-AMPH-1.	Protein CBG07900.	0.659
amph-1	CBG22463	A8XX10	A8Y2C4	Protein CBR-AMPH-1.	Protein CBG22463.	0.973
amph-1	Cbr-erp-1	A8XX10	A8XJP4	Protein CBR-AMPH-1.	Protein CBR-ERP-1.	0.530
amph-1	fcho-1	A8XX10	A8X3P0	Protein CBR-AMPH-1.	Protein CBG07108.	0.908
amph-1	sdpn-1	A8XX10	A8XPZ1	Protein CBR-AMPH-1.	Protein CBR-SDPN-1.	0.703
amph-1	snx-1	A8XX10	A8WVN0	Protein CBR-AMPH-1.	Protein CBR-SNX-1.	0.765
amph-1	snx-6	A8XX10	E3CTY4	Protein CBR-AMPH-1.	Protein CBR-SNX-6.	0.768
amph-1	toca-1	A8XX10	A8XNH1	Protein CBR-AMPH-1.	Protein CBR-TOCA-1.	0.494
amph-1	toca-2	A8XX10	A8XSA5	Protein CBR-AMPH-1.	Protein CBR-TOCA-2.	0.494