(27 nodes) PAZ domain superfamily network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG27927	Protein CBG27927. (124 aa)
	dcr-1	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily. (2030 aa)
	Cbr-ppw-2	Protein CBR-PPW-2; Belongs to the argonaute family. (993 aa)
	CBG24316	Protein CBG24316; Belongs to the argonaute family. (905 aa)
	Cbr-sago-2	Protein CBR-SAGO-2; Belongs to the argonaute family. (884 aa)
	CBG00577	Protein CBG00577. (1043 aa)
	Cbr-ergo-1.1	Protein CBR-ERGO-1.1. (1185 aa)
	hrde-1	Protein CBG01380; Belongs to the argonaute family. (1053 aa)
	nrde-3.2	Protein CBG02180; Belongs to the argonaute family. (811 aa)
	CBG03703	Protein CBG03703. (964 aa)
	alg-5	Histone H2B; Belongs to the histone H2B family. (919 aa)
	CBG05516	Protein CBG05516. (889 aa)
	CBG06401	Protein CBG06401; Belongs to the argonaute family. (892 aa)
	alg-1	Protein CBR-ALG-1; Belongs to the argonaute family. (1037 aa)
	CBG09416	Protein CBG09416; Belongs to the argonaute family. (939 aa)
	Cbr-tag-76	Protein CBR-TAG-76. (1076 aa)
	prg-1	Protein CBR-PRG-1; Belongs to the argonaute family. (826 aa)
	CBG12321	Protein CBG12321; Belongs to the argonaute family. (951 aa)
	CBG14470	Protein CBG14470. (574 aa)
	CBG16098	Protein CBG16098; Belongs to the argonaute family. (1045 aa)
	CBG16129	Protein CBG16129. (1044 aa)
	csr-1	Protein CBR-CSR-1. (1003 aa)
	ergo-1.2	Protein CBR-ERGO-1.2. (1174 aa)
	sago-1	Protein CBR-SAGO-1. (844 aa)
	rde-1	Protein CBR-RDE-1. (987 aa)
	CBG21165	Protein CBG21165. (403 aa)
	wago-11	Protein CBG21364; Belongs to the argonaute family. (1046 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG00577	dcr-1	A8WNJ6	A8Y3J1	Protein CBG00577.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.521
CBG00577	prg-1	A8WNJ6	A8XEN9	Protein CBG00577.	Protein CBR-PRG-1; Belongs to the argonaute family.	0.658
CBG03703	dcr-1	A8WWI1	A8Y3J1	Protein CBG03703.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.657
CBG05516	dcr-1	A8X023	A8Y3J1	Protein CBG05516.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.524
CBG05516	rde-1	A8X023	A8XVL1	Protein CBG05516.	Protein CBR-RDE-1.	0.580
CBG06401	dcr-1	A8X254	A8Y3J1	Protein CBG06401; Belongs to the argonaute family.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.509
CBG09416	dcr-1	A8X957	A8Y3J1	Protein CBG09416; Belongs to the argonaute family.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.524
CBG12321	Cbr-tag-76	A8XFJ6	A8XA10	Protein CBG12321; Belongs to the argonaute family.	Protein CBR-TAG-76.	0.409
CBG12321	dcr-1	A8XFJ6	A8Y3J1	Protein CBG12321; Belongs to the argonaute family.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.509
CBG12321	prg-1	A8XFJ6	A8XEN9	Protein CBG12321; Belongs to the argonaute family.	Protein CBR-PRG-1; Belongs to the argonaute family.	0.645
CBG14470	dcr-1	A8XK06	A8Y3J1	Protein CBG14470.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.509
CBG16098	dcr-1	A8XN44	A8Y3J1	Protein CBG16098; Belongs to the argonaute family.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.674
CBG16129	dcr-1	A8XP19	A8Y3J1	Protein CBG16129.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.674
CBG21165	dcr-1	A8XZC5	A8Y3J1	Protein CBG21165.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.674
CBG24316	dcr-1	A8WKF9	A8Y3J1	Protein CBG24316; Belongs to the argonaute family.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.674
Cbr-ergo-1.1	dcr-1	A8WPC9	A8Y3J1	Protein CBR-ERGO-1.1.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.674
Cbr-ppw-2	dcr-1	A8WJ71	A8Y3J1	Protein CBR-PPW-2; Belongs to the argonaute family.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.524
Cbr-sago-2	dcr-1	A8XEJ5	A8Y3J1	Protein CBR-SAGO-2; Belongs to the argonaute family.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.509
Cbr-tag-76	CBG12321	A8XA10	A8XFJ6	Protein CBR-TAG-76.	Protein CBG12321; Belongs to the argonaute family.	0.409
Cbr-tag-76	dcr-1	A8XA10	A8Y3J1	Protein CBR-TAG-76.	Protein CBR-DCR-1; Belongs to the helicase family. Dicer subfamily.	0.674