STRINGSTRING
CBG20910 CBG20910 CBG00745 CBG00745 cpsf-3 cpsf-3 hoe-1 hoe-1 CBG07020 CBG07020 CBG06992 CBG06992 nape-2 nape-2 mrt-1.2 mrt-1.2 CBG11581 CBG11581 swip-10 swip-10 CBG14679 CBG14679 CBG17385 CBG17385 cpsf-2 cpsf-2 ethe-1 ethe-1 CBG21025 CBG21025 mrt-1.1 mrt-1.1 CBG22443 CBG22443
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CBG20910Protein CBG20910. (325 aa)
CBG00745Protein CBG00745. (652 aa)
cpsf-3Protein CBR-CPSF-3. (727 aa)
hoe-1Protein CBR-HOE-1. (832 aa)
CBG07020Protein CBG07020. (211 aa)
CBG06992Protein CBG06992. (487 aa)
nape-2Protein CBR-NAPE-2. (181 aa)
mrt-1.2Protein CBG08727. (600 aa)
CBG11581Protein CBG11581. (353 aa)
swip-10Protein CBG14084. (492 aa)
CBG14679Protein CBG14679. (356 aa)
CBG17385Protein CBG17385. (296 aa)
cpsf-2Probable cleavage and polyadenylation specificity factor subunit 2; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. (842 aa)
ethe-1Protein CBR-ETHE-1. (239 aa)
CBG21025Protein CBG21025. (259 aa)
mrt-1.1Protein CBG22248. (624 aa)
CBG22443Protein CBG22443. (644 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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