STRINGSTRING
vps-4 vps-4 spg-7 spg-7 rpt-5 rpt-5 rpt-6 rpt-6 CBG11069 CBG11069 rpt-2 rpt-2 rpt-3 rpt-3 cdc-48.3 cdc-48.3 CBG07244 CBG07244 rpt-4 rpt-4 lex-1 lex-1 CBG04772 CBG04772 mei-1 mei-1 mspn-1 mspn-1 cdc-48.1 cdc-48.1 cdc-48.2 cdc-48.2 CBG23920 CBG23920 spas-1 spas-1 CBG16820 CBG16820 mac-1 mac-1 rpt-1 rpt-1 CBG20339 CBG20339 nsf-1 nsf-1 figl-1 figl-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vps-4Protein CBR-VPS-4; Belongs to the AAA ATPase family. (295 aa)
spg-7Protein CBR-SPG-7. (814 aa)
rpt-5Protein CBR-RPT-5; Belongs to the AAA ATPase family. (430 aa)
rpt-6Protein CBR-RPT-6; Belongs to the AAA ATPase family. (417 aa)
CBG11069Protein CBG11069; Belongs to the AAA ATPase family. (438 aa)
rpt-2Protein CBR-RPT-2; Belongs to the AAA ATPase family. (443 aa)
rpt-3Protein CBR-RPT-3; Belongs to the AAA ATPase family. (417 aa)
cdc-48.3Protein CBR-CDC-48.3. (736 aa)
CBG07244Protein CBG07244; Belongs to the AAA ATPase family. (353 aa)
rpt-4Protein CBR-RPT-4; Belongs to the AAA ATPase family. (398 aa)
lex-1Tat-binding homolog 7; Thought to form a complex that enhances transcription from repetitive DNA sequences by modulating chromatin structure. (1285 aa)
CBG04772Protein CBG04772; Belongs to the AAA ATPase family. (426 aa)
mei-1Meiotic spindle formation protein mei-1; Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays. This activity may promote rapid reorganization of cellular microtubule arrays. Required specifically for meiotic spindle formation in the female germline; the presence of this protein is inimical to the formation of mitotic spindles. (484 aa)
mspn-1Protein CBG03401; Belongs to the AAA ATPase family. (341 aa)
cdc-48.1Protein CBG03070; Belongs to the AAA ATPase family. (865 aa)
cdc-48.2Protein CBG00746; Belongs to the AAA ATPase family. (811 aa)
CBG23920Protein CBG23920; Belongs to the AAA ATPase family. (268 aa)
spas-1Probable spastin homolog spas-1; Severs microtubules, probably in an ATP-dependent fashion. Belongs to the AAA ATPase family. Spastin subfamily. (542 aa)
CBG16820Protein CBG16820. (749 aa)
mac-1Protein CBR-MAC-1. (826 aa)
rpt-1Protein CBR-RPT-1; Belongs to the AAA ATPase family. (435 aa)
CBG20339Protein CBG20339; Belongs to the AAA ATPase family. (415 aa)
nsf-1Protein CBR-NSF-1. (754 aa)
figl-1Fidgetin-like protein 1; Has a role in spindle assembly which acts in the progression through mitosis during embryogenesis. Required for fertility (By similarity). (591 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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