22 items (Caenorhabditis briggsae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	igeg-1	Protein CBG01840. (270 aa)
	let-60	Protein CBR-LET-60. (184 aa)
	sel-12	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (450 aa)
	ubq-1	Protein CBR-UBQ-1. (770 aa)
	Cbr-dhs-8	Protein CBR-DHS-8. (202 aa)
	hop-1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (358 aa)
	CBG12102	Protein CBG12102. (186 aa)
	CBG13096	Protein CBG13096. (319 aa)
	dhs-7	Protein CBR-DHS-7. (329 aa)
	CBG13098	Protein CBG13098. (328 aa)
	CBG13117	Protein CBG13117. (355 aa)
	pen-2	Protein CBR-PEN-2. (101 aa)
	CBG13763	Protein CBG13763. (327 aa)
	ral-1	Protein CBR-RAL-1. (213 aa)
	ubq-2	Protein CBR-UBQ-2. (128 aa)
	sem-5	Protein CBR-SEM-5. (229 aa)
	CBG17392	Protein CBG17392. (1745 aa)
	CBG17796	Protein CBG17796. (53 aa)
	aph-2	Protein CBR-APH-2. (721 aa)
	CBG23363	Protein CBG23363. (206 aa)
	aph-1	Protein CBR-APH-1. (330 aa)
	ubl-1	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the N-terminal section; belongs to the ubiquitin family. (163 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG12102	CBG17796	A8XER6	A8XRT8	Protein CBG12102.	Protein CBG17796.	0.952
CBG12102	CBG23363	A8XER6	A8Y437	Protein CBG12102.	Protein CBG23363.	0.442
CBG12102	let-60	A8XER6	A8X0X5	Protein CBG12102.	Protein CBR-LET-60.	0.473
CBG12102	ral-1	A8XER6	A8XMJ1	Protein CBG12102.	Protein CBR-RAL-1.	0.473
CBG12102	sem-5	A8XER6	A8XPY6	Protein CBG12102.	Protein CBR-SEM-5.	0.442
CBG12102	ubl-1	A8XER6	P37164	Protein CBG12102.	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the N-terminal section; belongs to the ubiquitin family.	0.998
CBG12102	ubq-1	A8XER6	A8X7Y8	Protein CBG12102.	Protein CBR-UBQ-1.	0.999
CBG12102	ubq-2	A8XER6	A8XMR9	Protein CBG12102.	Protein CBR-UBQ-2.	0.908
CBG17796	CBG12102	A8XRT8	A8XER6	Protein CBG17796.	Protein CBG12102.	0.952
CBG17796	CBG23363	A8XRT8	A8Y437	Protein CBG17796.	Protein CBG23363.	0.442
CBG17796	let-60	A8XRT8	A8X0X5	Protein CBG17796.	Protein CBR-LET-60.	0.473
CBG17796	ral-1	A8XRT8	A8XMJ1	Protein CBG17796.	Protein CBR-RAL-1.	0.473
CBG17796	sem-5	A8XRT8	A8XPY6	Protein CBG17796.	Protein CBR-SEM-5.	0.442
CBG17796	ubl-1	A8XRT8	P37164	Protein CBG17796.	Ubiquitin-like protein 1-40S ribosomal protein S27a; In the N-terminal section; belongs to the ubiquitin family.	0.998
CBG17796	ubq-1	A8XRT8	A8X7Y8	Protein CBG17796.	Protein CBR-UBQ-1.	0.993
CBG17796	ubq-2	A8XRT8	A8XMR9	Protein CBG17796.	Protein CBR-UBQ-2.	0.902
CBG23363	CBG12102	A8Y437	A8XER6	Protein CBG23363.	Protein CBG12102.	0.442
CBG23363	CBG17796	A8Y437	A8XRT8	Protein CBG23363.	Protein CBG17796.	0.442
CBG23363	igeg-1	A8Y437	A8WQP1	Protein CBG23363.	Protein CBG01840.	0.481
CBG23363	let-60	A8Y437	A8X0X5	Protein CBG23363.	Protein CBR-LET-60.	0.843