(23 nodes) Tandem pore domain potassium channels network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	twk-44	Protein CBR-TWK-44; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (944 aa)
	CBG17601	Protein CBG17601; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (572 aa)
	twk-43	Protein CBR-TWK-43; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (609 aa)
	twk-40	Protein CBR-TWK-40; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (393 aa)
	twk-11	Protein CBR-TWK-11; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (1845 aa)
	twk-46	Two pore potassium channel protein sup-9. (318 aa)
	twk-1	Protein CBR-TWK-1; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (463 aa)
	CBG03693	Protein CBG03693. (679 aa)
	twk-4	Protein CBR-TWK-4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (401 aa)
	twk-18	Protein CBR-TWK-18; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (461 aa)
	CBG23637	Protein CBG23637. (356 aa)
	twk-12	TWiK family of potassium channels protein 12. (687 aa)
	egl-23	Protein CBR-EGL-23; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (673 aa)
	twk-9	Protein CBR-TWK-9; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (579 aa)
	twk-7	Protein CBR-TWK-7; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (564 aa)
	twk-13	Protein CBR-TWK-13; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (646 aa)
	Cbr-twk-2	Protein CBR-TWK-2; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (983 aa)
	twk-35	Protein CBR-TWK-35; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (557 aa)
	twk-48	Protein CBR-TWK-48; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (372 aa)
	twk-32	Protein CBR-TWK-32; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (629 aa)
	twk-39	Protein CBR-TWK-39; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (680 aa)
	twk-28	Protein CBR-TWK-28; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (537 aa)
	twk-22	Protein CBR-TWK-22; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family. (775 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG03693	twk-46	A8WVL8	A8XXJ8	Protein CBG03693.	Two pore potassium channel protein sup-9.	0.552
CBG17601	twk-46	A8XRB3	A8XXJ8	Protein CBG17601; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.459
Cbr-twk-2	twk-46	H8WGV8	A8XXJ8	Protein CBR-TWK-2; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.552
egl-23	twk-46	A8Y2B8	A8XXJ8	Protein CBR-EGL-23; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.434
twk-1	twk-46	A8Y190	A8XXJ8	Protein CBR-TWK-1; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.892
twk-12	twk-46	A8X8I4	A8XXJ8	TWiK family of potassium channels protein 12.	Two pore potassium channel protein sup-9.	0.459
twk-13	twk-43	A8Y3V6	A8XRB6	Protein CBR-TWK-13; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Protein CBR-TWK-43; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.408
twk-13	twk-46	A8Y3V6	A8XXJ8	Protein CBR-TWK-13; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.459
twk-28	twk-46	A8XJW0	A8XXJ8	Protein CBR-TWK-28; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.459
twk-32	twk-46	A8XCW9	A8XXJ8	Protein CBR-TWK-32; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.442
twk-35	twk-4	A8X056	A8WPC4	Protein CBR-TWK-35; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Protein CBR-TWK-4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.442
twk-35	twk-43	A8X056	A8XRB6	Protein CBR-TWK-35; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Protein CBR-TWK-43; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.443
twk-35	twk-46	A8X056	A8XXJ8	Protein CBR-TWK-35; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.480
twk-39	twk-46	A8XHH9	A8XXJ8	Protein CBR-TWK-39; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.459
twk-4	twk-35	A8WPC4	A8X056	Protein CBR-TWK-4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Protein CBR-TWK-35; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.442
twk-4	twk-46	A8WPC4	A8XXJ8	Protein CBR-TWK-4; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.780
twk-40	twk-46	A8XS78	A8XXJ8	Protein CBR-TWK-40; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.411
twk-43	twk-13	A8XRB6	A8Y3V6	Protein CBR-TWK-43; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Protein CBR-TWK-13; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.408
twk-43	twk-35	A8XRB6	A8X056	Protein CBR-TWK-43; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Protein CBR-TWK-35; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	0.443
twk-43	twk-46	A8XRB6	A8XXJ8	Protein CBR-TWK-43; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.	Two pore potassium channel protein sup-9.	0.444