(11 nodes) Vitamin B5 (pantothenate) metabolism network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG06697	Protein CBG06697. (241 aa)
	CBG08117	Protein CBG08117. (297 aa)
	CBG09817	Protein CBG09817. (283 aa)
	CBG10005	Protein CBG10005. (227 aa)
	fasn-1	Protein CBR-FASN-1. (2731 aa)
	pnk-1	Protein CBR-PNK-1. (445 aa)
	pnk-4	Protein CBR-PNK-4; Belongs to the type II pantothenate kinase family. (752 aa)
	pks-1	Protein CBG14683. (7813 aa)
	CBG18542	Protein CBG18542. (432 aa)
	CBG22156	Protein CBG22156. (396 aa)
	CBG23511	Protein CBG23511. (280 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG06697	CBG09817	A8X2W0	A8X9Q2	Protein CBG06697.	Protein CBG09817.	0.992
CBG06697	CBG10005	A8X2W0	A8XA56	Protein CBG06697.	Protein CBG10005.	0.788
CBG06697	CBG18542	A8X2W0	A8XTJ2	Protein CBG06697.	Protein CBG18542.	0.987
CBG06697	CBG22156	A8X2W0	A8Y1N8	Protein CBG06697.	Protein CBG22156.	0.987
CBG06697	pnk-1	A8X2W0	A8XG37	Protein CBG06697.	Protein CBR-PNK-1.	0.863
CBG06697	pnk-4	A8X2W0	A8XKA1	Protein CBG06697.	Protein CBR-PNK-4; Belongs to the type II pantothenate kinase family.	0.994
CBG08117	CBG10005	A8X5U9	A8XA56	Protein CBG08117.	Protein CBG10005.	0.915
CBG08117	CBG18542	A8X5U9	A8XTJ2	Protein CBG08117.	Protein CBG18542.	0.900
CBG08117	CBG22156	A8X5U9	A8Y1N8	Protein CBG08117.	Protein CBG22156.	0.900
CBG08117	CBG23511	A8X5U9	A8Y3R2	Protein CBG08117.	Protein CBG23511.	0.908
CBG08117	fasn-1	A8X5U9	A8XFD1	Protein CBG08117.	Protein CBR-FASN-1.	0.888
CBG08117	pks-1	A8X5U9	A8XKG1	Protein CBG08117.	Protein CBG14683.	0.987
CBG09817	CBG06697	A8X9Q2	A8X2W0	Protein CBG09817.	Protein CBG06697.	0.992
CBG09817	CBG10005	A8X9Q2	A8XA56	Protein CBG09817.	Protein CBG10005.	0.784
CBG09817	CBG18542	A8X9Q2	A8XTJ2	Protein CBG09817.	Protein CBG18542.	0.781
CBG09817	CBG22156	A8X9Q2	A8Y1N8	Protein CBG09817.	Protein CBG22156.	0.781
CBG09817	pnk-1	A8X9Q2	A8XG37	Protein CBG09817.	Protein CBR-PNK-1.	0.868
CBG09817	pnk-4	A8X9Q2	A8XKA1	Protein CBG09817.	Protein CBR-PNK-4; Belongs to the type II pantothenate kinase family.	0.992
CBG10005	CBG06697	A8XA56	A8X2W0	Protein CBG10005.	Protein CBG06697.	0.788
CBG10005	CBG08117	A8XA56	A8X5U9	Protein CBG10005.	Protein CBG08117.	0.915