25 items (Caenorhabditis briggsae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rhgf-1	Protein CBR-RHGF-1. (1376 aa)
	CBG02049	Protein CBG02049. (378 aa)
	cgef-1	Protein CBR-CGEF-1. (650 aa)
	itsn-1	Protein CBR-ITSN-1. (1099 aa)
	exc-5	Protein CBR-EXC-5. (859 aa)
	ephx-1	Protein CBR-TAG-218. (1258 aa)
	CBG23593	Protein CBG23593. (439 aa)
	sos-1	Protein CBR-SOS-1. (339 aa)
	aph-1	Protein CBR-APH-1. (330 aa)
	CBG22158	Protein CBG22158. (482 aa)
	aph-2	Protein CBR-APH-2. (721 aa)
	CBG19473	Protein CBG19473. (96 aa)
	vav-1	Protein CBR-VAV-1. (971 aa)
	Cbr-tag-52	Protein CBR-TAG-52. (631 aa)
	pen-2	Protein CBR-PEN-2. (101 aa)
	tiam-1	Protein CBR-CGEF-2. (610 aa)
	hop-1	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (358 aa)
	CBG12078	Protein CBG12078. (812 aa)
	unc-73	Protein CBR-UNC-73. (1618 aa)
	ubq-1	Protein CBR-UBQ-1. (770 aa)
	sel-12	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family. (450 aa)
	pix-1	Protein CBR-PIX-1. (808 aa)
	osg-1.1	Protein CBG05214. (623 aa)
	osg-1.2	Protein CBG05206. (647 aa)
	ect-2	Protein CBR-ECT-2. (958 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02049	Cbr-tag-52	A8WRW3	A8XJM4	Protein CBG02049.	Protein CBR-TAG-52.	0.563
CBG02049	cgef-1	A8WRW3	A8WRW0	Protein CBG02049.	Protein CBR-CGEF-1.	0.916
CBG02049	osg-1.1	A8WRW3	A8WZE6	Protein CBG02049.	Protein CBG05214.	0.586
CBG02049	osg-1.2	A8WRW3	A8WZD8	Protein CBG02049.	Protein CBG05206.	0.420
CBG02049	pix-1	A8WRW3	A8X4W5	Protein CBG02049.	Protein CBR-PIX-1.	0.554
CBG02049	rhgf-1	A8WRW3	A8WXP4	Protein CBG02049.	Protein CBR-RHGF-1.	0.431
CBG12078	rhgf-1	A8XEI0	A8WXP4	Protein CBG12078.	Protein CBR-RHGF-1.	0.436
CBG12078	tiam-1	A8XEI0	A8XF06	Protein CBG12078.	Protein CBR-CGEF-2.	0.445
CBG19473	aph-2	A8XVM6	A8XZV7	Protein CBG19473.	Protein CBR-APH-2.	0.963
CBG19473	hop-1	A8XVM6	A8XEJ8	Protein CBG19473.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.795
CBG19473	pen-2	A8XVM6	A8XHA1	Protein CBG19473.	Protein CBR-PEN-2.	0.961
CBG19473	sel-12	A8XVM6	A8X5S7	Protein CBG19473.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.795
CBG23593	rhgf-1	A8WIW5	A8WXP4	Protein CBG23593.	Protein CBR-RHGF-1.	0.492
CBG23593	vav-1	A8WIW5	A8XNX6	Protein CBG23593.	Protein CBR-VAV-1.	0.615
Cbr-tag-52	CBG02049	A8XJM4	A8WRW3	Protein CBR-TAG-52.	Protein CBG02049.	0.563
Cbr-tag-52	cgef-1	A8XJM4	A8WRW0	Protein CBR-TAG-52.	Protein CBR-CGEF-1.	0.702
Cbr-tag-52	ect-2	A8XJM4	A8WT00	Protein CBR-TAG-52.	Protein CBR-ECT-2.	0.451
Cbr-tag-52	pix-1	A8XJM4	A8X4W5	Protein CBR-TAG-52.	Protein CBR-PIX-1.	0.679
Cbr-tag-52	rhgf-1	A8XJM4	A8WXP4	Protein CBR-TAG-52.	Protein CBR-RHGF-1.	0.428
aph-1	aph-2	B0K098	A8XZV7	Protein CBR-APH-1.	Protein CBR-APH-2.	0.999