(15 nodes) SUMOylation of transcription factors network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG11828	Protein CBG11828. (55 aa)
	ubc-9	Protein CBR-UBC-9; Belongs to the ubiquitin-conjugating enzyme family. (166 aa)
	CBG01718	Protein CBG01718. (382 aa)
	unc-130	Protein CBR-UNC-130. (332 aa)
	fkh-6	Protein CBR-FKH-6. (327 aa)
	hsr-9	Protein CBR-HSR-9. (1165 aa)
	CBG05231	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family. (166 aa)
	hlh-30	Protein CBR-HLH-30. (392 aa)
	inso-1	Protein CBR-TAG-303. (765 aa)
	gei-17	Protein CBR-GEI-17. (675 aa)
	CBG16850	Protein CBG16850; Belongs to the ubiquitin-conjugating enzyme family. (203 aa)
	miz-1	Protein CBG17627. (848 aa)
	CBG18011	Protein CBG18011. (322 aa)
	smo-1	Small ubiquitin-related modifier. (95 aa)
	CBG24924	Protein CBG24924. (389 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG01718	CBG11828	A8WR05	A8XE43	Protein CBG01718.	Protein CBG11828.	0.786
CBG01718	CBG18011	A8WR05	A8XST7	Protein CBG01718.	Protein CBG18011.	0.712
CBG01718	CBG24924	A8WR05	H8WHA0	Protein CBG01718.	Protein CBG24924.	0.417
CBG01718	gei-17	A8WR05	A8XFG1	Protein CBG01718.	Protein CBR-GEI-17.	0.864
CBG01718	hlh-30	A8WR05	A8WZP5	Protein CBG01718.	Protein CBR-HLH-30.	0.417
CBG01718	hsr-9	A8WR05	A8WWI2	Protein CBG01718.	Protein CBR-HSR-9.	0.577
CBG01718	miz-1	A8WR05	A8XRN8	Protein CBG01718.	Protein CBG17627.	0.736
CBG01718	smo-1	A8WR05	G2J6V9	Protein CBG01718.	Small ubiquitin-related modifier.	0.786
CBG05231	CBG11828	A8WZF7	A8XE43	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBG11828.	0.979
CBG05231	CBG16850	A8WZF7	A8XPY1	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBG16850; Belongs to the ubiquitin-conjugating enzyme family.	0.905
CBG05231	CBG18011	A8WZF7	A8XST7	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBG18011.	0.731
CBG05231	CBG24924	A8WZF7	H8WHA0	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBG24924.	0.417
CBG05231	gei-17	A8WZF7	A8XFG1	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBR-GEI-17.	0.864
CBG05231	hlh-30	A8WZF7	A8WZP5	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBR-HLH-30.	0.417
CBG05231	hsr-9	A8WZF7	A8WWI2	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBR-HSR-9.	0.577
CBG05231	miz-1	A8WZF7	A8XRN8	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBG17627.	0.736
CBG05231	smo-1	A8WZF7	G2J6V9	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Small ubiquitin-related modifier.	0.979
CBG05231	ubc-9	A8WZF7	A8WR03	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	Protein CBR-UBC-9; Belongs to the ubiquitin-conjugating enzyme family.	0.900
CBG11828	CBG01718	A8XE43	A8WR05	Protein CBG11828.	Protein CBG01718.	0.786
CBG11828	CBG05231	A8XE43	A8WZF7	Protein CBG11828.	Protein CBG05231; Belongs to the ubiquitin-conjugating enzyme family.	0.979