(12 nodes) Lysine catabolism network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	slc-25a21	Protein CBG16392; Belongs to the mitochondrial carrier (TC 2.A.29) family. (285 aa)
	ogdh-1	2-oxoglutarate dehydrogenase, mitochondrial; The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3) (By similarity). (1027 aa)
	dlst-1	Protein CBR-DLST-1. (474 aa)
	CBG25625	Protein CBG25625. (220 aa)
	dld-1	Dihydrolipoyl dehydrogenase. (495 aa)
	CBG18666	Protein CBG18666. (213 aa)
	CBG18665	Protein CBG18665. (145 aa)
	aass-1	Protein CBG13546. (934 aa)
	alh-9	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family. (508 aa)
	CBG05075	Protein CBG05075. (387 aa)
	CBG05074	Protein CBG05074. (399 aa)
	CBG02861	Protein CBG02861. (370 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02861	alh-9	A8WTC7	A8X7V5	Protein CBG02861.	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	0.449
CBG02861	dld-1	A8WTC7	A8Y0F0	Protein CBG02861.	Dihydrolipoyl dehydrogenase.	0.610
CBG02861	dlst-1	A8WTC7	E3CU69	Protein CBG02861.	Protein CBR-DLST-1.	0.575
CBG05074	CBG05075	A8WZ41	A8WZ42	Protein CBG05074.	Protein CBG05075.	0.901
CBG05074	alh-9	A8WZ41	A8X7V5	Protein CBG05074.	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	0.419
CBG05074	dld-1	A8WZ41	A8Y0F0	Protein CBG05074.	Dihydrolipoyl dehydrogenase.	0.469
CBG05075	CBG05074	A8WZ42	A8WZ41	Protein CBG05075.	Protein CBG05074.	0.901
CBG05075	alh-9	A8WZ42	A8X7V5	Protein CBG05075.	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	0.419
CBG05075	dld-1	A8WZ42	A8Y0F0	Protein CBG05075.	Dihydrolipoyl dehydrogenase.	0.769
CBG18665	alh-9	A8XTU8	A8X7V5	Protein CBG18665.	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	0.419
CBG18665	dld-1	A8XTU8	A8Y0F0	Protein CBG18665.	Dihydrolipoyl dehydrogenase.	0.469
CBG18666	alh-9	A8XTU9	A8X7V5	Protein CBG18666.	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	0.404
CBG18666	dld-1	A8XTU9	A8Y0F0	Protein CBG18666.	Dihydrolipoyl dehydrogenase.	0.469
CBG25625	alh-9	B6IFB0	A8X7V5	Protein CBG25625.	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	0.495
CBG25625	dld-1	B6IFB0	A8Y0F0	Protein CBG25625.	Dihydrolipoyl dehydrogenase.	0.981
CBG25625	dlst-1	B6IFB0	E3CU69	Protein CBG25625.	Protein CBR-DLST-1.	0.996
aass-1	alh-9	A8XI56	A8X7V5	Protein CBG13546.	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	0.957
alh-9	CBG02861	A8X7V5	A8WTC7	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	Protein CBG02861.	0.449
alh-9	CBG05074	A8X7V5	A8WZ41	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	Protein CBG05074.	0.419
alh-9	CBG05075	A8X7V5	A8WZ42	Protein CBR-ALH-9; Belongs to the aldehyde dehydrogenase family.	Protein CBG05075.	0.419