STRINGSTRING
CBG25779 CBG25779 CBG03715 CBG03715 uaf-1 uaf-1 Cbr-thoc-3.2 Cbr-thoc-3.2 CBG21776 CBG21776 thoc-7 thoc-7 ncbp-2 ncbp-2 cfim-2 cfim-2 aly-1 aly-1 CBG21777 CBG21777 CBG20811 CBG20811 CBG20685 CBG20685 CBG20414 CBG20414 prp-17 prp-17 CBG20393 CBG20393 CBG19980 CBG19980 CBG19557 CBG19557 cpsf-2 cpsf-2 rbm-3.1.2 rbm-3.1.2 rbm-3.2 rbm-3.2 CBG04229 CBG04229 snr-7 snr-7 CBG04018 CBG04018 cpf-2 cpf-2 rsp-3 rsp-3 rsp-5 rsp-5 rsp-1 rsp-1 rsp-2 rsp-2 cdl-1 cdl-1 rsp-7 rsp-7 cpsf-3 cpsf-3 symk-1 symk-1 suf-1 suf-1 cpf-1 cpf-1 CBG00602 CBG00602 hel-1 hel-1 snr-1 snr-1 uaf-2 uaf-2 CBG24958 CBG24958 thoc-5 thoc-5 CBG24318 CBG24318 thoc-1 thoc-1 rnp-5 rnp-5 fipp-1 fipp-1 CBG23605 CBG23605 CBG18686 CBG18686 mag-1 mag-1 rbm-3.1.1 rbm-3.1.1 rnp-4 rnp-4 CBG19556 CBG19556 CBG18044 CBG18044 drr-2 drr-2 rsp-6 rsp-6 CBG17705 CBG17705 cpsf-1 cpsf-1 pcf-11 pcf-11 CBG15683 CBG15683 CBG15138 CBG15138 CBG14713 CBG14713 ncbp-1 ncbp-1 cfim-1 cfim-1 thoc-3 thoc-3 snr-5 snr-5 CBG05375 CBG05375 snr-6 snr-6 pfs-2 pfs-2 CBG10243 CBG10243 mog-1 mog-1 CBG09871 CBG09871 clpf-1 clpf-1 CBG09591 CBG09591 pap-1 pap-1 thoc-2 thoc-2 rsr-1 rsr-1 CBG07158 CBG07158 aly-3 aly-3 CBG05418 CBG05418 CBG05376 CBG05376 pabp-2 pabp-2 CBG28074 CBG28074
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
CBG25779Protein CBG25779. (821 aa)
CBG03715Protein CBG03715. (137 aa)
uaf-1Splicing factor U2AF 65 kDa subunit; Necessary for the splicing of pre-mRNA. Binds to the polypyrimidine tract of introns early during spliceosome assembly (By similarity). (488 aa)
Cbr-thoc-3.2Protein CBR-THOC-3.2. (185 aa)
CBG21776Protein CBG21776. (389 aa)
thoc-7Protein CBG22401. (208 aa)
ncbp-2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap stru [...] (157 aa)
cfim-2Protein CBG21723. (496 aa)
aly-1Protein CBR-ALY-1. (227 aa)
CBG21777Protein CBG21777. (183 aa)
CBG20811Protein CBG20811. (541 aa)
CBG20685Protein CBG20685. (445 aa)
CBG20414Protein CBG20414. (335 aa)
prp-17Protein CBR-PRP-17. (561 aa)
CBG20393Protein CBG20393. (622 aa)
CBG19980Protein CBG19980. (213 aa)
CBG19557Protein CBG19557. (494 aa)
cpsf-2Probable cleavage and polyadenylation specificity factor subunit 2; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. (842 aa)
rbm-3.1.2Protein CBG18684. (84 aa)
rbm-3.2Protein CBG18685. (84 aa)
CBG04229Protein CBG04229. (269 aa)
snr-7Small nuclear ribonucleoprotein G. (79 aa)
CBG04018Protein CBG04018; Belongs to the DEAD box helicase family. (393 aa)
cpf-2Protein CBR-CPF-2. (319 aa)
rsp-3Protein CBR-RSP-3. (258 aa)
rsp-5Protein CBR-RSP-5. (150 aa)
rsp-1Protein CBR-RSP-1. (304 aa)
rsp-2Protein CBR-RSP-2. (256 aa)
cdl-1Protein CBR-CDL-1. (381 aa)
rsp-7Protein CBR-RSP-7. (489 aa)
cpsf-3Protein CBR-CPSF-3. (727 aa)
symk-1Protein CBR-SYMK-1. (1198 aa)
suf-1Protein CBR-SUF-1. (752 aa)
cpf-1Protein CBR-CPF-1. (446 aa)
CBG00602Protein CBG00602. (191 aa)
hel-1Protein CBR-HEL-1. (424 aa)
snr-1Small nuclear ribonucleoprotein Sm D3. (136 aa)
uaf-2Protein CBR-UAF-2. (281 aa)
CBG24958Protein CBG24958. (302 aa)
thoc-5Protein CBG24679. (594 aa)
CBG24318Protein CBG24318. (724 aa)
thoc-1Protein CBR-THOC-1. (730 aa)
rnp-5Protein CBR-RNP-5. (293 aa)
fipp-1Protein CBR-FIPP-1. (499 aa)
CBG23605Protein CBG23605. (630 aa)
CBG18686Protein CBG18686. (84 aa)
mag-1Protein CBR-MAG-1. (153 aa)
rbm-3.1.1Protein CBG18692. (79 aa)
rnp-4RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (142 aa)
CBG19556Protein CBG19556. (562 aa)
CBG18044Protein CBG18044. (348 aa)
drr-2Protein CBR-DRR-2. (226 aa)
rsp-6Protein CBR-RSP-6. (173 aa)
CBG17705Protein CBG17705. (227 aa)
cpsf-1Probable cleavage and polyadenylation specificity factor subunit 1; CPSF plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A)polymerase and other factors to bring about cleavage and poly(A) addition. This subunit is involved in the RNA recognition step of the polyadenylation reaction (By similarity). (1454 aa)
pcf-11Protein CBG16521. (868 aa)
CBG15683Protein CBG15683. (251 aa)
CBG15138Protein CBG15138. (300 aa)
CBG14713Protein CBG14713. (113 aa)
ncbp-1Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-1 does not bind directly capped RNAs (m7GpppG- capped RNA) but is required to stabilize the movement of the N-terminal loop of ncbp-2 and lock the CBC into a high affinity cap-binding state with the c [...] (793 aa)
cfim-1Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (227 aa)
thoc-3Protein CBR-THOC-3.1. (146 aa)
snr-5Protein CBR-SNR-5; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
CBG05375Protein CBG05375. (179 aa)
snr-6Probable small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
pfs-2Protein CBR-PFS-2. (814 aa)
CBG10243Protein CBG10243. (387 aa)
mog-1Protein CBR-MOG-1. (990 aa)
CBG09871Protein CBG09871. (382 aa)
clpf-1Protein clpf-1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (428 aa)
CBG09591Protein CBG09591. (635 aa)
pap-1Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (668 aa)
thoc-2Protein CBR-THOC-2. (1443 aa)
rsr-1Protein CBR-RSR-1. (581 aa)
CBG07158Protein CBG07158. (203 aa)
aly-3Protein CBR-ALY-3. (240 aa)
CBG05418Protein CBG05418. (181 aa)
CBG05376Protein CBG05376. (182 aa)
pabp-2Protein CBR-PABP-2. (205 aa)
CBG28074Protein CBG28074. (275 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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