(113 nodes) Sensory Perception network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	bcmo-1	Protein CBG18419. (530 aa)
	bcmo-2	Protein CBG18441. (463 aa)
	CBG18780	Protein CBG18780. (263 aa)
	ptr-15	Protein CBR-PTR-15. (849 aa)
	srsx-32	Protein CBR-SRSX-32. (319 aa)
	CBG19167	Protein CBG19167. (157 aa)
	CBG19208	Protein CBG19208. (1082 aa)
	ptr-1	Protein CBR-PTR-1. (951 aa)
	ptr-23	Protein CBR-PTR-23. (982 aa)
	ptr-22	Protein CBR-PTR-22. (881 aa)
	ptr-8	Protein CBR-PTR-8. (905 aa)
	CBG20816	Protein CBG20816. (169 aa)
	CBG20818	Protein CBG20818. (136 aa)
	CBG20825	Protein CBG20825. (561 aa)
	nmt-1	Glycylpeptide N-tetradecanoyltransferase; Adds a myristoyl group to the N-terminal glycine residue of certain cellular proteins; Belongs to the NMT family. (450 aa)
	CBG22464	Protein CBG22464. (603 aa)
	CBG22536	Protein CBG22536. (330 aa)
	CBG22703	Protein CBG22703. (914 aa)
	drd-5	Protein CBG22749. (329 aa)
	CBG02892	Protein CBG02892. (383 aa)
	ptr-13	Protein CBR-PTR-13. (852 aa)
	ptr-20	Protein CBR-PTR-20. (894 aa)
	vit-6	Protein CBR-VIT-6. (1648 aa)
	otpl-4	Protein CBG01497. (601 aa)
	otpl-5	Protein CBG01509. (579 aa)
	otpl-6	Protein CBG01510. (580 aa)
	otpl-7	Protein CBG01511. (643 aa)
	ptr-16	Protein CBR-PTR-16. (808 aa)
	lhfp-4	Protein CBG00455. (227 aa)
	CBG24897	Protein CBG24897. (98 aa)
	CBG24890	Protein CBG24890. (411 aa)
	cdh-5	Protein CBR-CDH-5. (1564 aa)
	CBG18752	Protein CBG18752. (566 aa)
	ifo-1	Protein CBR-TTM-4. (1242 aa)
	CBG04744	Protein CBG04744. (295 aa)
	CBG27176	Protein CBG27176. (111 aa)
	ptr-18	Protein CBR-PTR-18. (905 aa)
	CBG02607	Protein CBG02607. (460 aa)
	ptr-6	Protein CBR-PTR-6. (989 aa)
	tmc-1	Protein CBR-TMC-1. (1097 aa)
	ptr-12	Protein CBR-PTR-12. (940 aa)
	calm-1	Protein CBR-CALM-1. (143 aa)
	CBG04377	Protein CBG04377. (872 aa)
	CBG06095	Protein CBG06095. (509 aa)
	srsx-35	Protein CBR-SRSX-36. (310 aa)
	CBG05563	Protein CBG05563. (520 aa)
	CBG05432	Protein CBG05432. (378 aa)
	ptr-11	Protein CBR-PTR-11. (933 aa)
	ptr-14	Protein CBR-PTR-14. (879 aa)
	sdn-1	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family. (298 aa)
	CBG05119	Protein CBG05119. (345 aa)
	ptr-21	Protein CBR-PTR-21. (913 aa)
	CBG27262	Protein CBG27262. (332 aa)
	srsx-33	Protein CBR-SRSX-33. (266 aa)
	dhs-20	Protein CBR-DHS-20. (341 aa)
	CBG23371	Protein CBG23371. (489 aa)
	dhs-16	Protein CBR-DHS-16. (387 aa)
	Cbr-srsx-27	Protein CBR-SRSX-27. (270 aa)
	srsx-28	Protein CBR-SRSX-28. (322 aa)
	srsx-29	Protein CBR-SRSX-29. (332 aa)
	CBG09540	Protein CBG09540. (561 aa)
	CBG08989	Protein CBG08989. (160 aa)
	CBG08596	Protein CBG08596. (323 aa)
	otpl-1	Protein CBG08334. (219 aa)
	CBG08333	Protein CBG08333. (620 aa)
	map-1	Methionine aminopeptidase; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (372 aa)
	CBG08322	Protein CBG08322. (275 aa)
	CBG08321	Protein CBG08321. (139 aa)
	nape-2	Protein CBR-NAPE-2. (181 aa)
	CBG08129	Protein CBG08129. (470 aa)
	ptr-17	Protein CBR-PTR-17. (894 aa)
	unc-3	Protein CBR-UNC-3. (491 aa)
	daf-6	Protein CBR-DAF-6. (922 aa)
	ptr-24	Protein CBR-PTR-24. (864 aa)
	ptr-3	Protein CBR-PTR-3. (927 aa)
	CBG06864	Protein CBG06864. (237 aa)
	ptr-9	Protein CBR-PTR-9. (861 aa)
	CBG13654	Protein CBG13654. (280 aa)
	CBG12326	Protein CBG12326. (91 aa)
	dhs-2	Protein CBR-DHS-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (275 aa)
	tax-2	Protein CBR-TAX-2. (810 aa)
	CBG12377	Protein CBG12377. (548 aa)
	CBG12154	Protein CBG12154. (431 aa)
	ptr-2	Protein CBR-PTR-2. (948 aa)
	CBG11814	Protein CBG11814. (209 aa)
	agr-1	Protein CBR-AGR-1. (1553 aa)
	exl-1	Protein CBR-EXL-1. (241 aa)
	CBG11065	Protein CBG11065. (823 aa)
	unc-52	Protein CBR-UNC-52. (2481 aa)
	otpl-3	Protein CBG10933. (584 aa)
	CBG10733	Protein CBG10733. (544 aa)
	let-99	Protein CBR-LET-99. (710 aa)
	map-2	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val). (441 aa)
	eps-8	Protein CBR-EPS-8. (918 aa)
	CBG14164	Protein CBG14164. (239 aa)
	Cbr-vit-4	Protein CBR-VIT-4. (1606 aa)
	Cbr-vit-5	Protein CBR-VIT-5. (1625 aa)
	vit-2	Protein CBR-VIT-2. (1615 aa)
	CBG14773	Protein CBG14773. (852 aa)
	ptr-4	Protein CBR-PTR-4. (989 aa)
	ptr-10	Protein CBG14920. (907 aa)
	CBG15114	Protein CBG15114. (227 aa)
	pef-1	Serine/threonine-protein phosphatase with EF-hands. (722 aa)
	ptr-5	Protein CBR-PTR-5. (1017 aa)
	CBG16394	Protein CBG16394. (364 aa)
	CBG16321	Protein CBG16321. (2870 aa)
	otpl-8	Protein CBG16260. (624 aa)
	tmc-2	Protein CBR-TMC-2. (1296 aa)
	Cbr-vit-1	Protein CBR-VIT-1. (1616 aa)
	set-12.1	Protein CBG16770. (400 aa)
	CBG16900	Protein CBG16900. (944 aa)
	ptr-19	Protein CBR-PTR-19. (1004 aa)
	CBG18375	Protein CBG18375. (1247 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG06095	CBG15114	A8X0X2	A8XLG1	Protein CBG06095.	Protein CBG15114.	0.431
CBG06095	eps-8	A8X0X2	A8XIV5	Protein CBG06095.	Protein CBR-EPS-8.	0.585
CBG08321	map-2	A8X6A6	A8XIH4	Protein CBG08321.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.835
CBG08322	map-2	A8X6A7	A8XIH4	Protein CBG08322.	Methionine aminopeptidase 2; Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met- Ala-, Cys, Gly, Pro, Ser, Thr, or Val).	0.717
CBG08989	CBG11814	A8X827	A8XE36	Protein CBG08989.	Protein CBG11814.	0.683
CBG08989	CBG14164	A8X827	A8XJF5	Protein CBG08989.	Protein CBG14164.	0.583
CBG11065	sdn-1	A8XCB7	A8WXQ7	Protein CBG11065.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.468
CBG11814	CBG08989	A8XE36	A8X827	Protein CBG11814.	Protein CBG08989.	0.683
CBG11814	CBG14164	A8XE36	A8XJF5	Protein CBG11814.	Protein CBG14164.	0.584
CBG12326	ptr-13	A8XFK1	A8WT48	Protein CBG12326.	Protein CBR-PTR-13.	0.502
CBG14164	CBG08989	A8XJF5	A8X827	Protein CBG14164.	Protein CBG08989.	0.583
CBG14164	CBG11814	A8XJF5	A8XE36	Protein CBG14164.	Protein CBG11814.	0.584
CBG15114	CBG06095	A8XLG1	A8X0X2	Protein CBG15114.	Protein CBG06095.	0.431
CBG15114	CBG18780	A8XLG1	A8XU38	Protein CBG15114.	Protein CBG18780.	0.451
CBG15114	CBG22464	A8XLG1	A8Y2C5	Protein CBG15114.	Protein CBG22464.	0.451
CBG15114	exl-1	A8XLG1	A8XCF4	Protein CBG15114.	Protein CBR-EXL-1.	0.522
CBG18780	CBG15114	A8XU38	A8XLG1	Protein CBG18780.	Protein CBG15114.	0.451
CBG18780	CBG22464	A8XU38	A8Y2C5	Protein CBG18780.	Protein CBG22464.	0.681
CBG18780	exl-1	A8XU38	A8XCF4	Protein CBG18780.	Protein CBR-EXL-1.	0.426
CBG20816	CBG20825	A8XYP4	A8XYQ2	Protein CBG20816.	Protein CBG20825.	0.418