STRINGSTRING
cth-2 cth-2 CBG04059 CBG04059 got-2.2 got-2.2 sptl-1 sptl-1 CBG09825 CBG09825 spl-1 spl-1 CBG23277 CBG23277 got-2.1 got-2.1 CBG17650 CBG17650 Cbr-got-1.3 Cbr-got-1.3 got-1.2 got-1.2 sptl-2 sptl-2 sptl-3 sptl-3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cth-2Protein CBG24746. (392 aa)
CBG04059Protein CBG04059. (504 aa)
got-2.2Aspartate aminotransferase. (414 aa)
sptl-1Protein CBR-SPTL-1. (451 aa)
CBG09825Protein CBG09825. (1092 aa)
spl-1Protein CBR-SPL-1. (552 aa)
CBG23277Protein CBG23277. (3553 aa)
got-2.1Aspartate aminotransferase. (419 aa)
CBG17650Protein CBG17650. (389 aa)
Cbr-got-1.3Protein CBR-GOT-1.3. (397 aa)
got-1.2Aspartate aminotransferase. (408 aa)
sptl-2Protein CBR-SPTL-2. (588 aa)
sptl-3Protein CBR-SPTL-3. (513 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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