(12 nodes) Animal haem peroxidase network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	hpx-2	Protein CBG11467. (718 aa)
	skpo-1	Protein CBG00649. (658 aa)
	pxn-1	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily. (1288 aa)
	CBG02940	Protein CBG02940. (1491 aa)
	mlt-7	Protein CBR-MLT-7. (1309 aa)
	bli-3	Protein CBR-DUOX-2. (1499 aa)
	CBG06977	Protein CBG06977. (1210 aa)
	CBG10411	Protein CBG10411. (765 aa)
	skpo-3	Protein CBG13113. (1083 aa)
	pxn-2	Protein CBR-PXN-2. (1366 aa)
	CBG17660	Protein CBG17660. (1545 aa)
	skpo-2	Protein CBG17768. (735 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02940	CBG17660	A8WT60	A8XRK9	Protein CBG02940.	Protein CBG17660.	0.650
CBG02940	pxn-1	A8WT60	A8WQH2	Protein CBG02940.	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	0.645
CBG02940	pxn-2	A8WT60	A8XR70	Protein CBG02940.	Protein CBR-PXN-2.	0.645
CBG17660	CBG02940	A8XRK9	A8WT60	Protein CBG17660.	Protein CBG02940.	0.650
CBG17660	pxn-1	A8XRK9	A8WQH2	Protein CBG17660.	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	0.645
CBG17660	pxn-2	A8XRK9	A8XR70	Protein CBG17660.	Protein CBR-PXN-2.	0.645
pxn-1	CBG02940	A8WQH2	A8WT60	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	Protein CBG02940.	0.645
pxn-1	CBG17660	A8WQH2	A8XRK9	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	Protein CBG17660.	0.645
pxn-1	pxn-2	A8WQH2	A8XR70	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	Protein CBR-PXN-2.	0.696
pxn-2	CBG02940	A8XR70	A8WT60	Protein CBR-PXN-2.	Protein CBG02940.	0.645
pxn-2	CBG17660	A8XR70	A8XRK9	Protein CBR-PXN-2.	Protein CBG17660.	0.645
pxn-2	pxn-1	A8XR70	A8WQH2	Protein CBR-PXN-2.	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	0.696