(21 nodes) (2009) A gene catalogue for post-diapause development of an anhydrobiotic arthropod Artemia franciscana. network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CBG17499	Protein CBG17499; Belongs to the peptidase C1 family. (356 aa)
	CBG24861	Protein CBG24861; Belongs to the peptidase C1 family. (323 aa)
	cpr-5	Protein CBR-CPR-5; Belongs to the peptidase C1 family. (345 aa)
	CBG01104	Protein CBG01104; Belongs to the peptidase C1 family. (337 aa)
	CBG06539	Protein CBG06539; Belongs to the peptidase C1 family. (332 aa)
	CBG06540	Protein CBG06540; Belongs to the peptidase C1 family. (196 aa)
	CBG06541	Protein CBG06541; Belongs to the peptidase C1 family. (280 aa)
	cpr-6	Protein CBR-CPR-6; Belongs to the peptidase C1 family. (389 aa)
	CBG11440	Protein CBG11440. (868 aa)
	sod-2	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (223 aa)
	eef-2	Protein CBR-EFT-2. (862 aa)
	CBG17826	Protein CBG17826; Belongs to the peptidase C1 family. (323 aa)
	CBG17829	Protein CBG17829; Belongs to the peptidase C1 family. (250 aa)
	cpr-3	Protein CBR-CPR-3; Belongs to the peptidase C1 family. (375 aa)
	cpr-4	Protein CBR-CPR-4; Belongs to the peptidase C1 family. (335 aa)
	hsp-70	Protein CBR-HSP-70; Belongs to the heat shock protein 70 family. (651 aa)
	CBG22431	Protein CBG22431; Belongs to the peptidase C1 family. (146 aa)
	cpl-1	Protein CBR-CPL-1; Belongs to the peptidase C1 family. (336 aa)
	CBG23351	Protein CBG23351; Belongs to the peptidase C1 family. (351 aa)
	cpr-1	Protein CBR-CPR-1; Belongs to the peptidase C1 family. (330 aa)
	CBG27310	Protein CBG27310; Belongs to the peptidase C1 family. (140 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG01104	cpl-1	A8WPK3	A8Y2M8	Protein CBG01104; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.518
CBG06539	cpl-1	A8X2H1	A8Y2M8	Protein CBG06539; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.497
CBG06540	CBG27310	A8X2H2	B6IKY1	Protein CBG06540; Belongs to the peptidase C1 family.	Protein CBG27310; Belongs to the peptidase C1 family.	0.487
CBG06541	CBG22431	A8X2H3	A8Y299	Protein CBG06541; Belongs to the peptidase C1 family.	Protein CBG22431; Belongs to the peptidase C1 family.	0.434
CBG06541	cpl-1	A8X2H3	A8Y2M8	Protein CBG06541; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.492
CBG11440	hsp-70	A8XD06	A8Y1C9	Protein CBG11440.	Protein CBR-HSP-70; Belongs to the heat shock protein 70 family.	0.441
CBG17499	cpl-1	A8XRB8	A8Y2M8	Protein CBG17499; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.967
CBG17826	cpl-1	A8XRV2	A8Y2M8	Protein CBG17826; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.492
CBG22431	CBG06541	A8Y299	A8X2H3	Protein CBG22431; Belongs to the peptidase C1 family.	Protein CBG06541; Belongs to the peptidase C1 family.	0.434
CBG22431	CBG23351	A8Y299	A8Y446	Protein CBG22431; Belongs to the peptidase C1 family.	Protein CBG23351; Belongs to the peptidase C1 family.	0.406
CBG22431	CBG27310	A8Y299	B6IKY1	Protein CBG22431; Belongs to the peptidase C1 family.	Protein CBG27310; Belongs to the peptidase C1 family.	0.455
CBG22431	cpl-1	A8Y299	A8Y2M8	Protein CBG22431; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.708
CBG22431	cpr-4	A8Y299	A8XUH4	Protein CBG22431; Belongs to the peptidase C1 family.	Protein CBR-CPR-4; Belongs to the peptidase C1 family.	0.404
CBG23351	CBG22431	A8Y446	A8Y299	Protein CBG23351; Belongs to the peptidase C1 family.	Protein CBG22431; Belongs to the peptidase C1 family.	0.406
CBG23351	cpl-1	A8Y446	A8Y2M8	Protein CBG23351; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.538
CBG24861	cpl-1	A8WLM7	A8Y2M8	Protein CBG24861; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.494
CBG27310	CBG06540	B6IKY1	A8X2H2	Protein CBG27310; Belongs to the peptidase C1 family.	Protein CBG06540; Belongs to the peptidase C1 family.	0.487
CBG27310	CBG22431	B6IKY1	A8Y299	Protein CBG27310; Belongs to the peptidase C1 family.	Protein CBG22431; Belongs to the peptidase C1 family.	0.455
CBG27310	cpl-1	B6IKY1	A8Y2M8	Protein CBG27310; Belongs to the peptidase C1 family.	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	0.483
cpl-1	CBG01104	A8Y2M8	A8WPK3	Protein CBR-CPL-1; Belongs to the peptidase C1 family.	Protein CBG01104; Belongs to the peptidase C1 family.	0.518