STRINGSTRING
smg-5 smg-5 tsn-1 tsn-1 gfl-1 gfl-1 smg-2 smg-2 rde-4 rde-4 daf-16 daf-16
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
smg-5Protein CBR-SMG-5. (551 aa)
tsn-1Staphylococcal nuclease domain-containing protein; Endonuclease that mediates miRNA decay of both protein-free and AGO2-loaded miRNAs. (913 aa)
gfl-1Protein CBR-GFL-1. (211 aa)
smg-2Protein CBR-SMG-2. (1051 aa)
rde-4Protein CBR-RDE-4. (390 aa)
daf-16Protein CBR-DAF-16. (497 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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