STRINGSTRING
rde-1 rde-1 ego-1 ego-1 rrf-3 rrf-3 hrde-1 hrde-1 cgh-1 cgh-1 henn-1 henn-1 rrf-1 rrf-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rde-1Protein CBR-RDE-1. (987 aa)
ego-1Protein CBR-EGO-1. (1631 aa)
rrf-3Protein CBR-RRF-3. (1766 aa)
hrde-1Protein CBG01380; Belongs to the argonaute family. (1053 aa)
cgh-1Protein CBR-CGH-1; Belongs to the DEAD box helicase family. (429 aa)
henn-1Protein CBG16658. (445 aa)
rrf-1Protein CBR-RRF-1. (1780 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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