STRINGSTRING
rrf-3 rrf-3 pir-1 pir-1 wago-11 wago-11 rrf-1 rrf-1 rde-1 rde-1 dpy-11 dpy-11 sago-1 sago-1 dpy-10 dpy-10 glp-4 glp-4 frpr-4 frpr-4 rol-6 rol-6 hrde-1 hrde-1 znfx-1 znfx-1 ego-1 ego-1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rrf-3Protein CBR-RRF-3. (1766 aa)
pir-1Protein CBR-PIR-1. (241 aa)
wago-11Protein CBG21364; Belongs to the argonaute family. (1046 aa)
rrf-1Protein CBR-RRF-1. (1780 aa)
rde-1Protein CBR-RDE-1. (987 aa)
dpy-11Protein CBR-DPY-11. (246 aa)
sago-1Protein CBR-SAGO-1. (844 aa)
dpy-10Protein CBR-DPY-10. (810 aa)
glp-4Protein CBR-VARS-2; Belongs to the class-I aminoacyl-tRNA synthetase family. (1075 aa)
frpr-4Protein CBR-FRPR-4; Belongs to the G-protein coupled receptor 1 family. (343 aa)
rol-6Protein CBR-ROL-6. (348 aa)
hrde-1Protein CBG01380; Belongs to the argonaute family. (1053 aa)
znfx-1Protein CBG00906. (2047 aa)
ego-1Protein CBR-EGO-1. (1631 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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