(20 nodes) Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tbc-13	Protein CBG00117. (440 aa)
	tbc-9	Protein CBG01761. (1228 aa)
	tbc-12	Protein CBR-TAG-236. (609 aa)
	tbc-2	Protein CBG02508. (944 aa)
	tbc-3	Protein CBG03461. (527 aa)
	tbc-20	Protein CBG04246. (439 aa)
	tbc-1	Protein CBG07653. (646 aa)
	tbc-19	Protein CBG07319. (1412 aa)
	tbc-17	Protein CBG07920. (798 aa)
	tbc-6	Protein CBG11166. (333 aa)
	tbc-7	Protein CBG14616. (639 aa)
	tbc-16	Protein CBG14774. (753 aa)
	tbc-10	Protein CBG15140. (419 aa)
	eat-17	Protein CBG16368. (449 aa)
	tbc-8	Protein CBG18399. (1007 aa)
	rbg-3	Protein CBR-RBG-3. (431 aa)
	tbck-1	Protein CBG20603. (865 aa)
	tbc-14	Protein CBG20779. (620 aa)
	tbc-18	Protein CBG22756. (839 aa)
	tbc-11	Protein CBG08089. (738 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rbg-3	tbc-10	A8XSS0	A8XLV0	Protein CBR-RBG-3.	Protein CBG15140.	0.453
rbg-3	tbc-14	A8XSS0	A8XYL3	Protein CBR-RBG-3.	Protein CBG20779.	0.546
rbg-3	tbc-20	A8XSS0	A8WX14	Protein CBR-RBG-3.	Protein CBG04246.	0.565
rbg-3	tbc-3	A8XSS0	A8WV44	Protein CBR-RBG-3.	Protein CBG03461.	0.574
rbg-3	tbc-9	A8XSS0	A8WQW5	Protein CBR-RBG-3.	Protein CBG01761.	0.506
tbc-1	tbc-12	A8X4D0	A8WRZ0	Protein CBG07653.	Protein CBR-TAG-236.	0.748
tbc-1	tbc-13	A8X4D0	A8WMB4	Protein CBG07653.	Protein CBG00117.	0.675
tbc-1	tbc-16	A8X4D0	A8XKM8	Protein CBG07653.	Protein CBG14774.	0.522
tbc-1	tbc-18	A8X4D0	A8Y337	Protein CBG07653.	Protein CBG22756.	0.632
tbc-1	tbc-20	A8X4D0	A8WX14	Protein CBG07653.	Protein CBG04246.	0.524
tbc-1	tbc-8	A8X4D0	A8XSM2	Protein CBG07653.	Protein CBG18399.	0.665
tbc-10	rbg-3	A8XLV0	A8XSS0	Protein CBG15140.	Protein CBR-RBG-3.	0.453
tbc-10	tbc-13	A8XLV0	A8WMB4	Protein CBG15140.	Protein CBG00117.	0.741
tbc-10	tbc-3	A8XLV0	A8WV44	Protein CBG15140.	Protein CBG03461.	0.408
tbc-10	tbc-7	A8XLV0	A8XKA8	Protein CBG15140.	Protein CBG14616.	0.761
tbc-11	tbc-13	E3CU00	A8WMB4	Protein CBG08089.	Protein CBG00117.	0.661
tbc-11	tbc-14	E3CU00	A8XYL3	Protein CBG08089.	Protein CBG20779.	0.528
tbc-11	tbc-20	E3CU00	A8WX14	Protein CBG08089.	Protein CBG04246.	0.557
tbc-11	tbc-3	E3CU00	A8WV44	Protein CBG08089.	Protein CBG03461.	0.543
tbc-11	tbc-8	E3CU00	A8XSM2	Protein CBG08089.	Protein CBG18399.	0.644