(33 nodes) PHD zinc finger network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	baz-2	Protein CBR-FLT-1. (1439 aa)
	phf-30	Protein CBR-PHF-30. (238 aa)
	jmjd-1.2	Protein CBR-JMJD-1.2. (761 aa)
	CBG02160	Protein CBG02160. (395 aa)
	lin-49	Protein CBR-LIN-49. (1052 aa)
	madf-3	Protein CBR-ATHP-2. (1796 aa)
	mys-4	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family. (621 aa)
	phf-14	Protein CBR-PHF-14. (571 aa)
	zfp-1	Protein CBR-ZFP-1. (914 aa)
	CBG07029	Protein CBG07029. (450 aa)
	CBG07847	Protein CBG07847. (557 aa)
	dgk-1	Diacylglycerol kinase. (953 aa)
	dpff-1	Protein CBR-DPFF-1. (377 aa)
	let-418	Protein CBR-LET-418. (1863 aa)
	CBG10189	Protein CBG10189. (846 aa)
	CBG10765	Protein CBG10765. (431 aa)
	CBG10766	Protein CBG10766. (164 aa)
	nurf-1	Protein CBR-NURF-1. (1674 aa)
	lin-59	Protein CBR-LIN-59. (1320 aa)
	CBG13665	Protein CBG13665. (1174 aa)
	Cbr-set-26	Protein CBR-SET-26. (1809 aa)
	lsy-13	Protein CBG13684. (277 aa)
	CBG13933	Protein CBG13933. (1375 aa)
	phf-15	Protein CBR-PHF-15. (860 aa)
	set-16	Protein CBR-SET-16. (2526 aa)
	athp-1	Protein CBR-ATHP-1. (1200 aa)
	CBG18437	Protein CBG18437. (527 aa)
	jmjd-2	Protein CBR-JMJD-2. (881 aa)
	ing-3	Inhibitor of growth protein. (502 aa)
	ash-2	Protein CBR-ASH-2. (557 aa)
	CBG22012	Protein CBG22012. (613 aa)
	CBG11090	Protein CBG11090. (508 aa)
	rbr-2	Lysine-specific demethylase rbr-2; Histone demethylase that specifically demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Does not demethylate histone H3 'Lys-9', H3 'Lys-27', H3 'Lys-36', H3 'Lys-79' or H4 'Lys-20'. Demethylates trimethylated and dimethylated but not monomethylated H3 'Lys-4'. Involved in larval development and vulva formation (By similarity). (1482 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG02160	ing-3	A8WS31	A8XYC8	Protein CBG02160.	Inhibitor of growth protein.	0.426
CBG02160	mys-4	A8WS31	A8WW58	Protein CBG02160.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.425
CBG07029	ing-3	A8X3V5	A8XYC8	Protein CBG07029.	Inhibitor of growth protein.	0.540
CBG07029	lin-49	A8X3V5	A8WV80	Protein CBG07029.	Protein CBR-LIN-49.	0.687
CBG07029	mys-4	A8X3V5	A8WW58	Protein CBG07029.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.598
CBG07847	CBG11090	A8X595	E3CU21	Protein CBG07847.	Protein CBG11090.	0.669
CBG07847	athp-1	A8X595	A8XSC8	Protein CBG07847.	Protein CBR-ATHP-1.	0.600
CBG07847	let-418	A8X595	A8X9E2	Protein CBG07847.	Protein CBR-LET-418.	0.400
CBG07847	lin-49	A8X595	A8WV80	Protein CBG07847.	Protein CBR-LIN-49.	0.693
CBG07847	mys-4	A8X595	A8WW58	Protein CBG07847.	Histone acetyltransferase; Belongs to the MYST (SAS/MOZ) family.	0.650
CBG07847	nurf-1	A8X595	A8XCE3	Protein CBG07847.	Protein CBR-NURF-1.	0.669
CBG07847	phf-15	A8X595	A8XMJ3	Protein CBG07847.	Protein CBR-PHF-15.	0.402
CBG11090	CBG07847	E3CU21	A8X595	Protein CBG11090.	Protein CBG07847.	0.669
CBG11090	ash-2	E3CU21	A8XZ73	Protein CBG11090.	Protein CBR-ASH-2.	0.865
CBG11090	let-418	E3CU21	A8X9E2	Protein CBG11090.	Protein CBR-LET-418.	0.426
CBG11090	lin-59	E3CU21	A8XEC9	Protein CBG11090.	Protein CBR-LIN-59.	0.458
CBG11090	madf-3	E3CU21	A8WVJ7	Protein CBG11090.	Protein CBR-ATHP-2.	0.630
CBG11090	nurf-1	E3CU21	A8XCE3	Protein CBG11090.	Protein CBR-NURF-1.	0.952
CBG13665	ash-2	A8XIF6	A8XZ73	Protein CBG13665.	Protein CBR-ASH-2.	0.608
CBG13665	jmjd-2	A8XIF6	A8XYB2	Protein CBG13665.	Protein CBR-JMJD-2.	0.453