50 items (Caenorhabditis briggsae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cbr-sax-7	Protein CBR-SAX-7. (1402 aa)
	pxn-1	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily. (1288 aa)
	syg-1	Protein CBR-SYG-1. (746 aa)
	igcm-4	Protein CBG02173. (539 aa)
	oig-2	Protein CBR-OIG-2. (108 aa)
	zig-10	Protein CBG02647. (320 aa)
	igdb-2	Protein CBG03342. (1255 aa)
	lad-2	Protein CBR-LAD-2. (1216 aa)
	rig-5	Protein CBR-RIG-5. (409 aa)
	zig-1	Protein CBR-ZIG-1. (265 aa)
	igcm-2	Protein CBR-IGCM-2. (757 aa)
	unc-22	Protein CBR-UNC-22. (7455 aa)
	ketn-1	Protein CBR-KETN-1. (5060 aa)
	syg-2	Protein CBR-SYG-2. (1270 aa)
	CBG07284	Protein CBG07284. (251 aa)
	igcm-1	Protein CBR-IGCM-1. (1145 aa)
	ncam-1	Protein CBR-NCAM-1. (965 aa)
	Cbr-ttn-1	Protein CBR-TTN-1. (2897 aa)
	CBG09244	Protein CBG09244. (3376 aa)
	unc-52	Protein CBR-UNC-52. (2481 aa)
	CBG12069	Protein CBG12069. (1567 aa)
	unc-89	Protein CBR-UNC-89. (6561 aa)
	madd-4	Protein CBR-MADD-4. (1042 aa)
	oig-4	Protein CBR-OIG-4. (155 aa)
	sax-3	Protein CBR-SAX-3. (1295 aa)
	zig-6	Protein CBR-ZIG-6. (239 aa)
	unc-40	Protein CBR-UNC-40. (1407 aa)
	rig-1	Protein CBR-RIG-1. (1170 aa)
	rig-4	Protein sidekick homolog; Cell adhesion protein; Belongs to the sidekick family. (2322 aa)
	him-4	Protein CBR-HIM-4. (2899 aa)
	CBG16014	Protein CBG16014. (2753 aa)
	dig-1.1	Protein CBR-DIG-1. (13580 aa)
	zig-4	Protein CBR-ZIG-4. (250 aa)
	CBG16886	Protein CBG16886. (324 aa)
	Cbr-dim-1	Protein CBR-DIM-1. (324 aa)
	CBG17535	Receptor protein-tyrosine kinase. (1447 aa)
	ver-3	Protein CBR-VER-3. (1313 aa)
	pxn-2	Protein CBR-PXN-2. (1366 aa)
	egl-15	Receptor protein-tyrosine kinase. (1192 aa)
	zig-5	Protein CBR-ZIG-5. (255 aa)
	CBG18884	Protein CBG18884. (1793 aa)
	CBG19196	Protein CBG19196. (2696 aa)
	unc-5	Protein CBR-UNC-5. (922 aa)
	cam-1	Protein CBR-CAM-1. (916 aa)
	mig-6	Protein CBR-MIG-6. (2157 aa)
	rig-6	Protein CBR-RIG-6. (1297 aa)
	zig-11	Protein CBG21818. (306 aa)
	sma-10	Protein CBG22529. (879 aa)
	wrk-1	Protein CBR-WRK-1. (576 aa)
	CBG18883	Protein CBG18883. (2598 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG07284	CBG16886	A8X528	A8XQ01	Protein CBG07284.	Protein CBG16886.	0.405
CBG07284	Cbr-dim-1	A8X528	A8XQ02	Protein CBG07284.	Protein CBR-DIM-1.	0.408
CBG07284	Cbr-sax-7	A8X528	H8WH61	Protein CBG07284.	Protein CBR-SAX-7.	0.403
CBG07284	zig-1	A8X528	A8WWW0	Protein CBG07284.	Protein CBR-ZIG-1.	0.408
CBG09244	CBG18884	A8X9J5	A8XUA1	Protein CBG09244.	Protein CBG18884.	0.490
CBG12069	cam-1	A8XEH4	A8XXB9	Protein CBG12069.	Protein CBR-CAM-1.	0.616
CBG12069	igcm-1	A8XEH4	A8X5T7	Protein CBG12069.	Protein CBR-IGCM-1.	0.435
CBG12069	igdb-2	A8XEH4	A8WUT9	Protein CBG12069.	Protein CBG03342.	0.543
CBG12069	pxn-1	A8XEH4	A8WQH2	Protein CBG12069.	Peroxidasin homolog; Belongs to the peroxidase family. XPO subfamily.	0.497
CBG12069	pxn-2	A8XEH4	A8XR70	Protein CBG12069.	Protein CBR-PXN-2.	0.497
CBG12069	syg-2	A8XEH4	A8X4J5	Protein CBG12069.	Protein CBR-SYG-2.	0.435
CBG12069	unc-89	A8XEH4	A8XEH5	Protein CBG12069.	Protein CBR-UNC-89.	0.479
CBG16886	CBG07284	A8XQ01	A8X528	Protein CBG16886.	Protein CBG07284.	0.405
CBG16886	igcm-1	A8XQ01	A8X5T7	Protein CBG16886.	Protein CBR-IGCM-1.	0.467
CBG16886	rig-5	A8XQ01	A8WWL0	Protein CBG16886.	Protein CBR-RIG-5.	0.540
CBG16886	zig-4	A8XQ01	A8XPY0	Protein CBG16886.	Protein CBR-ZIG-4.	0.405
CBG18884	CBG09244	A8XUA1	A8X9J5	Protein CBG18884.	Protein CBG09244.	0.490
CBG19196	unc-89	A8XV20	A8XEH5	Protein CBG19196.	Protein CBR-UNC-89.	0.522
Cbr-dim-1	CBG07284	A8XQ02	A8X528	Protein CBR-DIM-1.	Protein CBG07284.	0.408
Cbr-dim-1	igcm-1	A8XQ02	A8X5T7	Protein CBR-DIM-1.	Protein CBR-IGCM-1.	0.499