(22 nodes) Immunoglobulin like network (Caenorhabditis briggsae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	him-4	Protein CBR-HIM-4. (2899 aa)
	Cbr-sax-7	Protein CBR-SAX-7. (1402 aa)
	CBG18883	Protein CBG18883. (2598 aa)
	rig-6	Protein CBR-RIG-6. (1297 aa)
	CBG18884	Protein CBG18884. (1793 aa)
	zig-5	Protein CBR-ZIG-5. (255 aa)
	ver-3	Protein CBR-VER-3. (1313 aa)
	CBG17535	Receptor protein-tyrosine kinase. (1447 aa)
	Cbr-dim-1	Protein CBR-DIM-1. (324 aa)
	CBG16886	Protein CBG16886. (324 aa)
	dig-1.1	Protein CBR-DIG-1. (13580 aa)
	lad-2	Protein CBR-LAD-2. (1216 aa)
	zig-1	Protein CBR-ZIG-1. (265 aa)
	igcm-2	Protein CBR-IGCM-2. (757 aa)
	unc-22	Protein CBR-UNC-22. (7455 aa)
	ketn-1	Protein CBR-KETN-1. (5060 aa)
	syg-2	Protein CBR-SYG-2. (1270 aa)
	igcm-1	Protein CBR-IGCM-1. (1145 aa)
	Cbr-ttn-1	Protein CBR-TTN-1. (2897 aa)
	CBG09244	Protein CBG09244. (3376 aa)
	unc-89	Protein CBR-UNC-89. (6561 aa)
	CBG16014	Protein CBG16014. (2753 aa)

Your Current Organism:

Caenorhabditis briggsae

NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBG09244	CBG18884	A8X9J5	A8XUA1	Protein CBG09244.	Protein CBG18884.	0.490
CBG16886	igcm-1	A8XQ01	A8X5T7	Protein CBG16886.	Protein CBR-IGCM-1.	0.467
CBG18884	CBG09244	A8XUA1	A8X9J5	Protein CBG18884.	Protein CBG09244.	0.490
Cbr-dim-1	igcm-1	A8XQ02	A8X5T7	Protein CBR-DIM-1.	Protein CBR-IGCM-1.	0.499
Cbr-sax-7	igcm-1	H8WH61	A8X5T7	Protein CBR-SAX-7.	Protein CBR-IGCM-1.	0.797
Cbr-sax-7	rig-6	H8WH61	A8XY68	Protein CBR-SAX-7.	Protein CBR-RIG-6.	0.937
Cbr-sax-7	syg-2	H8WH61	A8X4J5	Protein CBR-SAX-7.	Protein CBR-SYG-2.	0.442
Cbr-ttn-1	unc-89	A8X9J3	A8XEH5	Protein CBR-TTN-1.	Protein CBR-UNC-89.	0.656
igcm-1	CBG16886	A8X5T7	A8XQ01	Protein CBR-IGCM-1.	Protein CBG16886.	0.467
igcm-1	Cbr-dim-1	A8X5T7	A8XQ02	Protein CBR-IGCM-1.	Protein CBR-DIM-1.	0.499
igcm-1	Cbr-sax-7	A8X5T7	H8WH61	Protein CBR-IGCM-1.	Protein CBR-SAX-7.	0.797
igcm-1	igcm-2	A8X5T7	A8WZ25	Protein CBR-IGCM-1.	Protein CBR-IGCM-2.	0.420
igcm-1	rig-6	A8X5T7	A8XY68	Protein CBR-IGCM-1.	Protein CBR-RIG-6.	0.704
igcm-1	syg-2	A8X5T7	A8X4J5	Protein CBR-IGCM-1.	Protein CBR-SYG-2.	0.613
igcm-1	unc-89	A8X5T7	A8XEH5	Protein CBR-IGCM-1.	Protein CBR-UNC-89.	0.435
igcm-1	zig-1	A8X5T7	A8WWW0	Protein CBR-IGCM-1.	Protein CBR-ZIG-1.	0.765
igcm-2	igcm-1	A8WZ25	A8X5T7	Protein CBR-IGCM-2.	Protein CBR-IGCM-1.	0.420
ketn-1	unc-22	A8X1Y2	A8X0N6	Protein CBR-KETN-1.	Protein CBR-UNC-22.	0.428
ketn-1	unc-89	A8X1Y2	A8XEH5	Protein CBR-KETN-1.	Protein CBR-UNC-89.	0.665
lad-2	rig-6	A8WUU9	A8XY68	Protein CBR-LAD-2.	Protein CBR-RIG-6.	0.937