STRINGSTRING
snu-23 snu-23 uaf-2 uaf-2 cyn-13 cyn-13 snr-1 snr-1 hsp-1 hsp-1 hel-1 hel-1 CBG00888 CBG00888 cyn-11 cyn-11 CBG03041 CBG03041 rsp-1 rsp-1 snr-3 snr-3 mog-5 mog-5 rsp-4 rsp-4 CBG03465 CBG03465 mog-2 mog-2 CBG04018 CBG04018 snr-7 snr-7 CBG03751 CBG03751 usp-39 usp-39 CBG04748 CBG04748 CBG05145 CBG05145 hrp-1 hrp-1 lsm-8 lsm-8 prp-6 prp-6 aly-3 aly-3 repo-1 repo-1 lsm-7 lsm-7 cyn-12 cyn-12 CBG06437 CBG06437 sftb-2 sftb-2 prp-21 prp-21 CBG06987 CBG06987 snrp-200 snrp-200 thoc-2 thoc-2 ddx-23 ddx-23 eftu-2 eftu-2 ddx-15 ddx-15 CBG09176 CBG09176 plrg-1 plrg-1 prp-38 prp-38 CBG09591 CBG09591 CBG09283 CBG09283 CBG09775 CBG09775 mog-1 mog-1 bud-31 bud-31 pqbp-1.1 pqbp-1.1 prp-31 prp-31 tcer-1 tcer-1 Cbr-tag-65 Cbr-tag-65 ddx-17 ddx-17 snr-6 snr-6 acin-1 acin-1 snr-5 snr-5 prp-4 prp-4 thoc-3 thoc-3 snrp-27 snrp-27 cdc-5l cdc-5l hrpk-1 hrpk-1 ncbp-1 ncbp-1 teg-4 teg-4 moa-2 moa-2 lsm-4 lsm-4 CBG13232 CBG13232 CBG13234 CBG13234 rsp-8 rsp-8 sap-49 sap-49 CBG13531 CBG13531 rnp-3 rnp-3 rnp-2 rnp-2 CBG14894 CBG14894 phf-5 phf-5 prp-8 prp-8 CBG16678 CBG16678 rnp-7 rnp-7 snrp-40.1 snrp-40.1 rbm-22 rbm-22 prp-3 prp-3 rnp-4 rnp-4 lsm-5 lsm-5 mag-1 mag-1 CBG19479 CBG19479 CBG19656 CBG19656 CBG19980 CBG19980 snr-2 snr-2 prp-17 prp-17 CBG20414 CBG20414 mog-4 mog-4 sftb-1 sftb-1 prp-19 prp-19 aly-1 aly-1 hsp-70 hsp-70 lsm-6 lsm-6 ncbp-2 ncbp-2 CBG22501 CBG22501 cwc-15 cwc-15 rbm-25 rbm-25 snr-4 snr-4 skp-1 skp-1 isy-1 isy-1 CBG13233 CBG13233 uaf-1 uaf-1 syf-2 syf-2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snu-23Protein CBG00030. (218 aa)
uaf-2Protein CBR-UAF-2. (281 aa)
cyn-13Peptidyl-prolyl cis-trans isomerase E; Catalyzes the cis-trans isomerization of proline imidic peptide bonds in proteins; Belongs to the cyclophilin-type PPIase family. PPIase E subfamily. (332 aa)
snr-1Small nuclear ribonucleoprotein Sm D3. (136 aa)
hsp-1Protein CBR-HSP-1; Belongs to the heat shock protein 70 family. (655 aa)
hel-1Protein CBR-HEL-1. (424 aa)
CBG00888Protein CBG00888. (366 aa)
cyn-11Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (183 aa)
CBG03041Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (128 aa)
rsp-1Protein CBR-RSP-1. (304 aa)
snr-3Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family. (127 aa)
mog-5Protein CBR-MOG-5. (1220 aa)
rsp-4Protein CBR-RSP-4. (125 aa)
CBG03465Protein CBG03465. (352 aa)
mog-2Protein CBR-MOG-2. (253 aa)
CBG04018Protein CBG04018; Belongs to the DEAD box helicase family. (393 aa)
snr-7Small nuclear ribonucleoprotein G. (79 aa)
CBG03751Protein CBG03751; Belongs to the heat shock protein 70 family. (689 aa)
usp-39Protein CBG04341. (626 aa)
CBG04748Protein CBG04748. (501 aa)
CBG05145Protein CBG05145; Belongs to the DEAD box helicase family. (400 aa)
hrp-1Protein CBR-HRP-1. (366 aa)
lsm-8U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA. (98 aa)
prp-6Protein CBR-PRP-6. (956 aa)
aly-3Protein CBR-ALY-3. (240 aa)
repo-1Protein CBR-REPO-1. (222 aa)
lsm-7Protein CBR-LSM-7. (103 aa)
cyn-12Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. (169 aa)
CBG06437Protein CBG06437. (206 aa)
sftb-2Protein CBG06453. (606 aa)
prp-21Protein CBR-PRP-21. (689 aa)
CBG06987Protein CBG06987. (138 aa)
snrp-200Protein CBG07909. (2145 aa)
thoc-2Protein CBR-THOC-2. (1443 aa)
ddx-23Protein CBG09074; Belongs to the DEAD box helicase family. (747 aa)
eftu-2Protein CBR-EFTU-2. (990 aa)
ddx-15Protein CBG08977. (754 aa)
CBG09176Protein CBG09176. (950 aa)
plrg-1Protein CBR-TAG-135. (508 aa)
prp-38Protein CBG09713. (317 aa)
CBG09591Protein CBG09591. (635 aa)
CBG09283Protein CBG09283. (761 aa)
CBG09775Protein CBG09775. (820 aa)
mog-1Protein CBR-MOG-1. (990 aa)
bud-31Protein CBG10019. (147 aa)
pqbp-1.1Protein CBR-PQBP-1.2. (272 aa)
prp-31Protein CBR-PRP-31. (505 aa)
tcer-1Protein CBR-TCER-1. (920 aa)
Cbr-tag-65Protein CBR-TAG-65. (667 aa)
ddx-17Protein CBG11408; Belongs to the DEAD box helicase family. (559 aa)
snr-6Probable small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (90 aa)
acin-1Protein CBR-ACIN-1. (575 aa)
snr-5Protein CBR-SNR-5; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (86 aa)
prp-4Protein CBR-PRP-4. (496 aa)
thoc-3Protein CBR-THOC-3.1. (146 aa)
snrp-27Protein CBR-SNRP-27. (648 aa)
cdc-5lProtein CBG12532. (790 aa)
hrpk-1Protein CBG12588. (398 aa)
ncbp-1Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-1 does not bind directly capped RNAs (m7GpppG- capped RNA) but is required to stabilize the movement of the N-terminal loop of ncbp-2 and lock the CBC into a high affinity cap-binding state with the c [...] (793 aa)
teg-4Protein CBR-TEG-4. (1218 aa)
moa-2Protein CBG13037. (219 aa)
lsm-4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (124 aa)
CBG13232Protein CBG13232. (248 aa)
CBG13234Protein CBG13234; Belongs to the heat shock protein 70 family. (629 aa)
rsp-8Protein CBR-RSP-8. (298 aa)
sap-49Protein CBR-SAP-49. (338 aa)
CBG13531Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family. (142 aa)
rnp-3Protein CBR-RNP-3. (220 aa)
rnp-2Protein CBR-RNP-2. (206 aa)
CBG14894Protein CBG14894. (545 aa)
phf-5Protein CBR-PHF-5. (110 aa)
prp-8Protein CBR-PRP-8. (2464 aa)
CBG16678Protein CBG16678. (1000 aa)
rnp-7Protein CBR-RNP-7. (312 aa)
snrp-40.1Protein CBG17375. (331 aa)
rbm-22Protein CBG17615. (409 aa)
prp-3Protein CBR-PRP-3. (637 aa)
rnp-4RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (142 aa)
lsm-5U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (91 aa)
mag-1Protein CBR-MAG-1. (153 aa)
CBG19479Protein CBG19479; Belongs to the heat shock protein 70 family. (561 aa)
CBG19656U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. (142 aa)
CBG19980Protein CBG19980. (213 aa)
snr-2Protein CBR-SNR-2. (160 aa)
prp-17Protein CBR-PRP-17. (561 aa)
CBG20414Protein CBG20414. (335 aa)
mog-4Protein CBR-MOG-4. (1007 aa)
sftb-1Protein CBG21228. (1272 aa)
prp-19Protein CBG21324. (492 aa)
aly-1Protein CBR-ALY-1. (227 aa)
hsp-70Protein CBR-HSP-70; Belongs to the heat shock protein 70 family. (651 aa)
lsm-6Protein CBR-LSM-6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (77 aa)
ncbp-2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap stru [...] (157 aa)
CBG22501Protein CBG22501. (169 aa)
cwc-15Protein CBG22646. (232 aa)
rbm-25Protein CBG23510. (703 aa)
snr-4Small nuclear ribonucleoprotein Sm D2. (118 aa)
skp-1Protein CBR-SKP-1. (534 aa)
isy-1Protein CBG23070. (268 aa)
CBG13233Protein CBG13233; Belongs to the heat shock protein 70 family. (585 aa)
uaf-1Splicing factor U2AF 65 kDa subunit; Necessary for the splicing of pre-mRNA. Binds to the polypyrimidine tract of introns early during spliceosome assembly (By similarity). (488 aa)
syf-2Pre-mRNA-splicing factor syf-2; May be involved in pre-mRNA splicing. (233 aa)
Your Current Organism:
Caenorhabditis briggsae
NCBI taxonomy Id: 6238
Other names: C. briggsae, Caenorhabditis briggsae AF16
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