15 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ugt-1	UDP-GlucuronosylTransferase. (529 aa)
	ttbk-5	Protein kinase domain-containing protein. (373 aa)
	erp-44.1	Thioredoxin domain-containing protein. (411 aa)
	C40H1.3	Uncharacterized protein C40H1.3. (504 aa)
	cdr-3	CaDmium Responsive. (278 aa)
	test-1	Thyroglobulin type-1 domain-containing protein. (234 aa)
	C54F6.5	Uncharacterized protein. (56 aa)
	F08H9.4	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family. (147 aa)
	F11F1.4	DUF148 domain-containing protein. (240 aa)
	F11F1.5	DUF148 domain-containing protein. (246 aa)
	F11F1.8	DUF148 domain-containing protein. (187 aa)
	F41C3.1	Uncharacterized protein. (129 aa)
	kreg-1	Protein kreg-1; Plays a role in the stress response to heavy metals such as copper, probably in a fos-1/kgb-1-dependent manner. (83 aa)
	W09G12.7	EF-hand domain-containing protein. (433 aa)
	lys-3	Lysozyme-like protein 3; Plays a role in the stress response to heavy metals such as copper, probably in a kgb-1-dependent manner. (301 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C40H1.3	C54F6.5	C40H1.3.1	C54F6.5.1	Uncharacterized protein C40H1.3.	Uncharacterized protein.	0.759
C40H1.3	F11F1.4	C40H1.3.1	F11F1.4.1	Uncharacterized protein C40H1.3.	DUF148 domain-containing protein.	0.479
C40H1.3	F11F1.5	C40H1.3.1	F11F1.5.1	Uncharacterized protein C40H1.3.	DUF148 domain-containing protein.	0.461
C40H1.3	F11F1.8	C40H1.3.1	F11F1.8.1	Uncharacterized protein C40H1.3.	DUF148 domain-containing protein.	0.461
C40H1.3	F41C3.1	C40H1.3.1	F41C3.1.1	Uncharacterized protein C40H1.3.	Uncharacterized protein.	0.759
C40H1.3	kreg-1	C40H1.3.1	F53A9.2.1	Uncharacterized protein C40H1.3.	Protein kreg-1; Plays a role in the stress response to heavy metals such as copper, probably in a fos-1/kgb-1-dependent manner.	0.693
C54F6.5	C40H1.3	C54F6.5.1	C40H1.3.1	Uncharacterized protein.	Uncharacterized protein C40H1.3.	0.759
C54F6.5	F41C3.1	C54F6.5.1	F41C3.1.1	Uncharacterized protein.	Uncharacterized protein.	0.851
C54F6.5	kreg-1	C54F6.5.1	F53A9.2.1	Uncharacterized protein.	Protein kreg-1; Plays a role in the stress response to heavy metals such as copper, probably in a fos-1/kgb-1-dependent manner.	0.558
F08H9.4	cdr-3	F08H9.4a.1	C54D10.2.1	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	CaDmium Responsive.	0.499
F08H9.4	erp-44.1	F08H9.4a.1	C30H7.2b.1	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Thioredoxin domain-containing protein.	0.760
F08H9.4	test-1	F08H9.4a.1	C54E4.2b.1	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Thyroglobulin type-1 domain-containing protein.	0.660
F08H9.4	ttbk-5	F08H9.4a.1	C04G2.2.1	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	Protein kinase domain-containing protein.	0.614
F08H9.4	ugt-1	F08H9.4a.1	AC3.7.1	SHSP domain-containing protein; Belongs to the small heat shock protein (HSP20) family.	UDP-GlucuronosylTransferase.	0.470
F11F1.4	C40H1.3	F11F1.4.1	C40H1.3.1	DUF148 domain-containing protein.	Uncharacterized protein C40H1.3.	0.479
F11F1.5	C40H1.3	F11F1.5.1	C40H1.3.1	DUF148 domain-containing protein.	Uncharacterized protein C40H1.3.	0.461
F11F1.8	C40H1.3	F11F1.8.1	C40H1.3.1	DUF148 domain-containing protein.	Uncharacterized protein C40H1.3.	0.461
F41C3.1	C40H1.3	F41C3.1.1	C40H1.3.1	Uncharacterized protein.	Uncharacterized protein C40H1.3.	0.759
F41C3.1	C54F6.5	F41C3.1.1	C54F6.5.1	Uncharacterized protein.	Uncharacterized protein.	0.851
F41C3.1	kreg-1	F41C3.1.1	F53A9.2.1	Uncharacterized protein.	Protein kreg-1; Plays a role in the stress response to heavy metals such as copper, probably in a fos-1/kgb-1-dependent manner.	0.549