Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Y116A8C.13 | cku-70 | Y116A8C.13a.1 | Y47D3A.4.1 | Uncharacterized protein. | Ku domain-containing protein. | 0.560 |
| Y116A8C.13 | cku-80 | Y116A8C.13a.1 | R07E5.8a.1 | Uncharacterized protein. | ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. | 0.535 |
| Y116A8C.13 | dna-2 | Y116A8C.13a.1 | F43G6.1.1 | Uncharacterized protein. | Yeast DNA helicase/endonuclease family. | 0.780 |
| Y116A8C.13 | exo-1 | Y116A8C.13a.1 | F45G2.3.1 | Uncharacterized protein. | EXOnuclease. | 0.682 |
| Y116A8C.13 | lig-4 | Y116A8C.13a.1 | C07H6.1.1 | Uncharacterized protein. | LIGase. | 0.534 |
| Y116A8C.13 | mre-11 | Y116A8C.13a.1 | ZC302.1.2 | Uncharacterized protein. | Double-strand break repair protein mre-11; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. In response to ionizing radiation, probably required for the association between the brc-1-brd-1 heterodimer and rad-51 and let-70 in order to activate E3-ubiquitin ligase activity of the heterodimer and induce ubiquitination at DNA damage sites. Belongs to the MRE11/RAD32 family. | 0.578 |
| Y116A8C.13 | pif-1 | Y116A8C.13a.1 | Y18H1A.6a.1 | Uncharacterized protein. | ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. | 0.554 |
| Y116A8C.13 | rad-50 | Y116A8C.13a.1 | T04H1.4b.2 | Uncharacterized protein. | DNA repair protein rad-50; Essential component of the MRN complex, a complex that possesses single-stranded DNA endonuclease and 3' to 5' exonuclease activities, and plays a central role in double-strand break (DSB) repair, chromosome morphogenesis, DNA repair and meiosis. In the complex, it mediates the ATP-binding and is probably required to bind DNA ends and hold them in close proximity. | 0.579 |
| Y116A8C.13 | rad-51 | Y116A8C.13a.1 | Y43C5A.6a.1 | Uncharacterized protein. | DNA repair protein RAD51 homolog; Binds to single and double-stranded DNA and exhibits DNA- dependent ATPase activity. Underwinds duplex DNA. | 0.962 |
| Y116A8C.13 | rad-54 | Y116A8C.13a.1 | W06D4.6.1 | Uncharacterized protein. | Uncharacterized protein. | 0.921 |
| Y116A8C.13 | wrn-1 | Y116A8C.13a.1 | F18C5.2.1 | Uncharacterized protein. | Probable Werner syndrome ATP-dependent helicase homolog 1; Essential for the formation of DNA replication focal centers; stably associates with foci elements generating binding sites for RP-A. Exhibits a magnesium-dependent ATP-dependent DNA-helicase activity. May be involved in the control of genomic stability (By similarity). | 0.648 |
| cku-70 | Y116A8C.13 | Y47D3A.4.1 | Y116A8C.13a.1 | Ku domain-containing protein. | Uncharacterized protein. | 0.560 |
| cku-70 | cku-80 | Y47D3A.4.1 | R07E5.8a.1 | Ku domain-containing protein. | ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase. | 0.999 |
| cku-70 | com-1 | Y47D3A.4.1 | C44B9.5.1 | Ku domain-containing protein. | Completion Of Meiotic recombination (Budding yeast Com) related. | 0.665 |
| cku-70 | dna-2 | Y47D3A.4.1 | F43G6.1.1 | Ku domain-containing protein. | Yeast DNA helicase/endonuclease family. | 0.798 |
| cku-70 | exo-1 | Y47D3A.4.1 | F45G2.3.1 | Ku domain-containing protein. | EXOnuclease. | 0.941 |
| cku-70 | lig-4 | Y47D3A.4.1 | C07H6.1.1 | Ku domain-containing protein. | LIGase. | 0.997 |
| cku-70 | mre-11 | Y47D3A.4.1 | ZC302.1.2 | Ku domain-containing protein. | Double-strand break repair protein mre-11; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. In response to ionizing radiation, probably required for the association between the brc-1-brd-1 heterodimer and rad-51 and let-70 in order to activate E3-ubiquitin ligase activity of the heterodimer and induce ubiquitination at DNA damage sites. Belongs to the MRE11/RAD32 family. | 0.966 |
| cku-70 | pif-1 | Y47D3A.4.1 | Y18H1A.6a.1 | Ku domain-containing protein. | ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. | 0.609 |
| cku-70 | rad-50 | Y47D3A.4.1 | T04H1.4b.2 | Ku domain-containing protein. | DNA repair protein rad-50; Essential component of the MRN complex, a complex that possesses single-stranded DNA endonuclease and 3' to 5' exonuclease activities, and plays a central role in double-strand break (DSB) repair, chromosome morphogenesis, DNA repair and meiosis. In the complex, it mediates the ATP-binding and is probably required to bind DNA ends and hold them in close proximity. | 0.936 |
page 1 of 8