11 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C03B8.2	Uncharacterized protein C03B8.2. (59 aa)
	C04C3.4	Uncharacterized protein. (53 aa)
	dsb-3	Double-Strand Break factor. (345 aa)
	ggr-3	GABA/Glycine Receptor family (See gbr); Belongs to the ligand-gated ion channel (TC 1.A.9) family. (445 aa)
	aat-7	Amino Acid Transporter. (500 aa)
	K08H10.6	MFS domain-containing protein. (479 aa)
	attf-5	AT hook Transcription Factor family. (1610 aa)
	vglu-3	Potential vesicular glutamate transporter vglu-3. (544 aa)
	T11G6.3	MFS domain-containing protein. (475 aa)
	ztf-23	Zinc finger putative Transcription Factor family. (419 aa)
	madf-1	MADF domain-containing protein. (256 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C03B8.2	C04C3.4	C03B8.2.1	C04C3.4.1	Uncharacterized protein C03B8.2.	Uncharacterized protein.	0.924
C03B8.2	K08H10.6	C03B8.2.1	K08H10.6.1	Uncharacterized protein C03B8.2.	MFS domain-containing protein.	0.758
C03B8.2	T11G6.3	C03B8.2.1	T11G6.3.1	Uncharacterized protein C03B8.2.	MFS domain-containing protein.	0.764
C03B8.2	attf-5	C03B8.2.1	T04G9.1a.1	Uncharacterized protein C03B8.2.	AT hook Transcription Factor family.	0.697
C03B8.2	dsb-3	C03B8.2.1	C46A5.5b.1	Uncharacterized protein C03B8.2.	Double-Strand Break factor.	0.746
C03B8.2	vglu-3	C03B8.2.1	T07A5.3.1	Uncharacterized protein C03B8.2.	Potential vesicular glutamate transporter vglu-3.	0.693
C03B8.2	ztf-23	C03B8.2.1	Y54E10BR.8.1	Uncharacterized protein C03B8.2.	Zinc finger putative Transcription Factor family.	0.746
C04C3.4	C03B8.2	C04C3.4.1	C03B8.2.1	Uncharacterized protein.	Uncharacterized protein C03B8.2.	0.924
K08H10.6	C03B8.2	K08H10.6.1	C03B8.2.1	MFS domain-containing protein.	Uncharacterized protein C03B8.2.	0.758
K08H10.6	T11G6.3	K08H10.6.1	T11G6.3.1	MFS domain-containing protein.	MFS domain-containing protein.	0.758
K08H10.6	attf-5	K08H10.6.1	T04G9.1a.1	MFS domain-containing protein.	AT hook Transcription Factor family.	0.697
K08H10.6	dsb-3	K08H10.6.1	C46A5.5b.1	MFS domain-containing protein.	Double-Strand Break factor.	0.741
K08H10.6	vglu-3	K08H10.6.1	T07A5.3.1	MFS domain-containing protein.	Potential vesicular glutamate transporter vglu-3.	0.693
K08H10.6	ztf-23	K08H10.6.1	Y54E10BR.8.1	MFS domain-containing protein.	Zinc finger putative Transcription Factor family.	0.750
T11G6.3	C03B8.2	T11G6.3.1	C03B8.2.1	MFS domain-containing protein.	Uncharacterized protein C03B8.2.	0.764
T11G6.3	K08H10.6	T11G6.3.1	K08H10.6.1	MFS domain-containing protein.	MFS domain-containing protein.	0.758
T11G6.3	attf-5	T11G6.3.1	T04G9.1a.1	MFS domain-containing protein.	AT hook Transcription Factor family.	0.697
T11G6.3	dsb-3	T11G6.3.1	C46A5.5b.1	MFS domain-containing protein.	Double-Strand Break factor.	0.741
T11G6.3	vglu-3	T11G6.3.1	T07A5.3.1	MFS domain-containing protein.	Potential vesicular glutamate transporter vglu-3.	0.704
T11G6.3	ztf-23	T11G6.3.1	Y54E10BR.8.1	MFS domain-containing protein.	Zinc finger putative Transcription Factor family.	0.752