10 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C33A12.19	Uncharacterized protein. (121 aa)
	C54F6.12	DUF19 domain-containing protein. (195 aa)
	clec-221	C-type lectin domain-containing protein. (204 aa)
	aman-3	Alpha-mannosidase. (1064 aa)
	K08C7.4	Uncharacterized protein. (194 aa)
	clec-118	C-type lectin domain-containing protein. (193 aa)
	clec-125	C-type lectin domain-containing protein. (680 aa)
	Y46H3A.5	Lipase_3 domain-containing protein. (362 aa)
	clec-9	C-type LECtin. (414 aa)
	clec-187	C-type LECtin. (295 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C33A12.19	C54F6.12	C33A12.19a.1	C54F6.12.1	Uncharacterized protein.	DUF19 domain-containing protein.	0.886
C33A12.19	K08C7.4	C33A12.19a.1	K08C7.4.1	Uncharacterized protein.	Uncharacterized protein.	0.850
C33A12.19	Y46H3A.5	C33A12.19a.1	Y46H3A.5a.1	Uncharacterized protein.	Lipase_3 domain-containing protein.	0.533
C33A12.19	aman-3	C33A12.19a.1	F48C1.1.1	Uncharacterized protein.	Alpha-mannosidase.	0.532
C33A12.19	clec-118	C33A12.19a.1	W04H10.4a.1	Uncharacterized protein.	C-type lectin domain-containing protein.	0.570
C33A12.19	clec-125	C33A12.19a.1	W09G10.6.1	Uncharacterized protein.	C-type lectin domain-containing protein.	0.570
C33A12.19	clec-187	C33A12.19a.1	ZK896.6.1	Uncharacterized protein.	C-type LECtin.	0.574
C33A12.19	clec-221	C33A12.19a.1	F17C11.5.1	Uncharacterized protein.	C-type lectin domain-containing protein.	0.570
C33A12.19	clec-9	C33A12.19a.1	Y70C5C.2.1	Uncharacterized protein.	C-type LECtin.	0.550
C54F6.12	C33A12.19	C54F6.12.1	C33A12.19a.1	DUF19 domain-containing protein.	Uncharacterized protein.	0.886
C54F6.12	K08C7.4	C54F6.12.1	K08C7.4.1	DUF19 domain-containing protein.	Uncharacterized protein.	0.850
C54F6.12	Y46H3A.5	C54F6.12.1	Y46H3A.5a.1	DUF19 domain-containing protein.	Lipase_3 domain-containing protein.	0.533
C54F6.12	aman-3	C54F6.12.1	F48C1.1.1	DUF19 domain-containing protein.	Alpha-mannosidase.	0.532
C54F6.12	clec-118	C54F6.12.1	W04H10.4a.1	DUF19 domain-containing protein.	C-type lectin domain-containing protein.	0.570
C54F6.12	clec-125	C54F6.12.1	W09G10.6.1	DUF19 domain-containing protein.	C-type lectin domain-containing protein.	0.570
C54F6.12	clec-187	C54F6.12.1	ZK896.6.1	DUF19 domain-containing protein.	C-type LECtin.	0.570
C54F6.12	clec-221	C54F6.12.1	F17C11.5.1	DUF19 domain-containing protein.	C-type lectin domain-containing protein.	0.570
C54F6.12	clec-9	C54F6.12.1	Y70C5C.2.1	DUF19 domain-containing protein.	C-type LECtin.	0.550
K08C7.4	C33A12.19	K08C7.4.1	C33A12.19a.1	Uncharacterized protein.	Uncharacterized protein.	0.850
K08C7.4	C54F6.12	K08C7.4.1	C54F6.12.1	Uncharacterized protein.	DUF19 domain-containing protein.	0.850