25 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C01F1.4	G_PROTEIN_RECEP_F1_2 domain-containing protein. (333 aa)
	srx-39	G_PROTEIN_RECEP_F1_2 domain-containing protein. (290 aa)
	C04B4.6	Ubiquitin-like domain-containing protein. (155 aa)
	str-134	Seven TM Receptor. (328 aa)
	C14E2.6	Lipase_3 domain-containing protein. (194 aa)
	math-6	MATH (Meprin-associated Traf homology) domain containing. (278 aa)
	srt-5	Serpentine Receptor, class T. (353 aa)
	F13C5.3	Uncharacterized protein. (407 aa)
	srd-45	Serpentine receptor class delta-45. (316 aa)
	srsx-2	G_PROTEIN_RECEP_F1_2 domain-containing protein. (310 aa)
	srh-102	Serpentine Receptor, class H. (352 aa)
	str-141	Seven TM Receptor. (334 aa)
	str-9	Seven TM Receptor. (351 aa)
	F59E12.8	Uncharacterized protein. (412 aa)
	srw-91	G_PROTEIN_RECEP_F1_2 domain-containing protein. (367 aa)
	srw-119	G_PROTEIN_RECEP_F1_2 domain-containing protein. (367 aa)
	srsx-21	G_PROTEIN_RECEP_F1_2 domain-containing protein. (310 aa)
	ocam-1	ONECUT (Homeobox) Associated Motif containing. (134 aa)
	srw-133	G_PROTEIN_RECEP_F1_2 domain-containing protein. (372 aa)
	srh-70	Serpentine Receptor, class H. (334 aa)
	T21C9.11	Uncharacterized protein. (225 aa)
	srh-206	Serpentine Receptor, class H. (338 aa)
	srx-54	G_PROTEIN_RECEP_F1_2 domain-containing protein. (305 aa)
	ZC178.2	Uncharacterized protein. (2637 aa)
	ZK380.4	Uncharacterized protein. (244 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C01F1.4	C04B4.6	C01F1.4.1	C04B4.6.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.639
C01F1.4	C14E2.6	C01F1.4.1	C14E2.6.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Lipase_3 domain-containing protein.	0.846
C01F1.4	F13C5.3	C01F1.4.1	F13C5.3a.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.846
C01F1.4	F59E12.8	C01F1.4.1	F59E12.8.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.720
C01F1.4	T21C9.11	C01F1.4.1	T21C9.11.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.846
C01F1.4	ZC178.2	C01F1.4.1	ZC178.2.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.764
C01F1.4	ZK380.4	C01F1.4.1	ZK380.4.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Uncharacterized protein.	0.846
C01F1.4	math-6	C01F1.4.1	C16C4.11.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	MATH (Meprin-associated Traf homology) domain containing.	0.764
C01F1.4	ocam-1	C01F1.4.1	T02B5.2.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	ONECUT (Homeobox) Associated Motif containing.	0.846
C01F1.4	srd-45	C01F1.4.1	F17A2.7.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Serpentine receptor class delta-45.	0.846
C01F1.4	srh-102	C01F1.4.1	F40D4.11.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Serpentine Receptor, class H.	0.846
C01F1.4	srh-206	C01F1.4.1	Y102A5C.15.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Serpentine Receptor, class H.	0.846
C01F1.4	srh-70	C01F1.4.1	T21B4.9.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Serpentine Receptor, class H.	0.846
C01F1.4	srsx-2	C01F1.4.1	F20E11.2.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.846
C01F1.4	srsx-21	C01F1.4.1	R07B5.5.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.846
C01F1.4	srt-5	C01F1.4.1	C50H11.14.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Serpentine Receptor, class T.	0.846
C01F1.4	srw-119	C01F1.4.1	K12D9.7.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.846
C01F1.4	srw-133	C01F1.4.1	T05B4.6.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.846
C01F1.4	srw-91	C01F1.4.1	K04F1.4.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.846
C01F1.4	srx-39	C01F1.4.1	C03A7.6.1	G_PROTEIN_RECEP_F1_2 domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.846