13 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	srx-39	G_PROTEIN_RECEP_F1_2 domain-containing protein. (290 aa)
	C04B4.6	Ubiquitin-like domain-containing protein. (155 aa)
	math-6	MATH (Meprin-associated Traf homology) domain containing. (278 aa)
	srt-5	Serpentine Receptor, class T. (353 aa)
	F13C5.3	Uncharacterized protein. (407 aa)
	srsx-2	G_PROTEIN_RECEP_F1_2 domain-containing protein. (310 aa)
	F59E12.8	Uncharacterized protein. (412 aa)
	srw-119	G_PROTEIN_RECEP_F1_2 domain-containing protein. (367 aa)
	srw-133	G_PROTEIN_RECEP_F1_2 domain-containing protein. (372 aa)
	T21C9.11	Uncharacterized protein. (225 aa)
	srx-54	G_PROTEIN_RECEP_F1_2 domain-containing protein. (305 aa)
	ZC178.2	Uncharacterized protein. (2637 aa)
	ZK380.4	Uncharacterized protein. (244 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C04B4.6	F13C5.3	C04B4.6.1	F13C5.3a.1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.846
C04B4.6	F59E12.8	C04B4.6.1	F59E12.8.1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.846
C04B4.6	T21C9.11	C04B4.6.1	T21C9.11.1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.846
C04B4.6	ZC178.2	C04B4.6.1	ZC178.2.1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.846
C04B4.6	ZK380.4	C04B4.6.1	ZK380.4.1	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.846
C04B4.6	math-6	C04B4.6.1	C16C4.11.1	Ubiquitin-like domain-containing protein.	MATH (Meprin-associated Traf homology) domain containing.	0.846
C04B4.6	srsx-2	C04B4.6.1	F20E11.2.1	Ubiquitin-like domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.846
C04B4.6	srt-5	C04B4.6.1	C50H11.14.1	Ubiquitin-like domain-containing protein.	Serpentine Receptor, class T.	0.860
C04B4.6	srw-119	C04B4.6.1	K12D9.7.1	Ubiquitin-like domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.849
C04B4.6	srw-133	C04B4.6.1	T05B4.6.1	Ubiquitin-like domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.849
C04B4.6	srx-39	C04B4.6.1	C03A7.6.1	Ubiquitin-like domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.860
C04B4.6	srx-54	C04B4.6.1	Y102A5C.22.1	Ubiquitin-like domain-containing protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.872
F13C5.3	C04B4.6	F13C5.3a.1	C04B4.6.1	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.846
F13C5.3	F59E12.8	F13C5.3a.1	F59E12.8.1	Uncharacterized protein.	Uncharacterized protein.	0.846
F13C5.3	T21C9.11	F13C5.3a.1	T21C9.11.1	Uncharacterized protein.	Uncharacterized protein.	0.846
F13C5.3	ZC178.2	F13C5.3a.1	ZC178.2.1	Uncharacterized protein.	Uncharacterized protein.	0.846
F13C5.3	ZK380.4	F13C5.3a.1	ZK380.4.1	Uncharacterized protein.	Uncharacterized protein.	0.846
F13C5.3	math-6	F13C5.3a.1	C16C4.11.1	Uncharacterized protein.	MATH (Meprin-associated Traf homology) domain containing.	0.846
F13C5.3	srsx-2	F13C5.3a.1	F20E11.2.1	Uncharacterized protein.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.846
F13C5.3	srt-5	F13C5.3a.1	C50H11.14.1	Uncharacterized protein.	Serpentine Receptor, class T.	0.846