(24 nodes) Mixed, incl. Caenorhabditis protein of unknown function, DUF267, and Serpentine type 7TM GPCR chemoreceptor Str network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	srh-15	Serpentine Receptor, class H. (367 aa)
	srsx-30	G_PROTEIN_RECEP_F1_2 domain-containing protein. (304 aa)
	sra-28	Serpentine receptor class alpha-28. (341 aa)
	srm-5	Serpentine Receptor, class M. (358 aa)
	srm-4	Serpentine Receptor, class M. (349 aa)
	srm-6	Serpentine Receptor, class M. (338 aa)
	str-114	G_PROTEIN_RECEP_F1_2 domain-containing protein. (351 aa)
	srx-1	7TM_GPCR_Srx domain-containing protein. (328 aa)
	str-84	Seven TM Receptor. (338 aa)
	srr-4	Serpentine Receptor, class R. (403 aa)
	srn-1	Serpentine Receptor, class N. (361 aa)
	srbc-58	Serpentine Receptor, class BC (Class B-like). (291 aa)
	srh-11	Serpentine Receptor, class H. (344 aa)
	sru-48	Serpentine Receptor, class U. (331 aa)
	srr-9	Serpentine Receptor, class R. (388 aa)
	srh-71	Serpentine Receptor, class H. (348 aa)
	srg-32	Serpentine receptor class gamma; Belongs to the nematode receptor-like protein srg family. (303 aa)
	sra-25	Serpentine receptor class alpha-25. (335 aa)
	srm-1	Serpentine Receptor, class M. (331 aa)
	srm-2	Serpentine Receptor, class M. (336 aa)
	sre-43	Serpentine Receptor, class E (Epsilon). (360 aa)
	sri-9	Serpentine Receptor, class I. (347 aa)
	sru-12	Serpentine Receptor, class U. (326 aa)
	srt-13	Serpentine Receptor, class T. (357 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
sra-25	srbc-58	T26E3.9.1	R09E12.2.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class BC (Class B-like).	0.465
sra-25	sre-43	T26E3.9.1	W07G1.6.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class E (Epsilon).	0.803
sra-25	srg-32	T26E3.9.1	T21C9.7.1	Serpentine receptor class alpha-25.	Serpentine receptor class gamma; Belongs to the nematode receptor-like protein srg family.	0.810
sra-25	srh-15	T26E3.9.1	C50B6.6.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class H.	0.747
sra-25	srh-71	T26E3.9.1	T10D4.5.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class H.	0.811
sra-25	sri-9	T26E3.9.1	Y102A5C.29.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class I.	0.905
sra-25	srm-1	T26E3.9.1	T28H11.2.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class M.	0.546
sra-25	srm-2	T26E3.9.1	T28H11.3.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class M.	0.476
sra-25	srm-4	T26E3.9.1	F47B8.7.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class M.	0.542
sra-25	srm-5	T26E3.9.1	F47B8.12.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class M.	0.461
sra-25	srm-6	T26E3.9.1	F47B8.9a.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class M.	0.476
sra-25	srn-1	T26E3.9.1	K12B6.5.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class N.	0.509
sra-25	srr-9	T26E3.9.1	T05B11.2.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class R.	0.409
sra-25	srsx-30	T26E3.9.1	C51E3.5.1	Serpentine receptor class alpha-25.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.602
sra-25	sru-12	T26E3.9.1	Y45F10B.5.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class U.	0.807
sra-25	sru-48	T26E3.9.1	T03G11.2.1	Serpentine receptor class alpha-25.	Serpentine Receptor, class U.	0.469
sra-25	srx-1	T26E3.9.1	F59E11.1.1	Serpentine receptor class alpha-25.	7TM_GPCR_Srx domain-containing protein.	0.403
sra-25	str-114	T26E3.9.1	F59B1.1b.1	Serpentine receptor class alpha-25.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.817
sra-25	str-84	T26E3.9.1	F59E11.13.1	Serpentine receptor class alpha-25.	Seven TM Receptor.	0.816
sra-28	srbc-58	F18C5.6.1	R09E12.2.1	Serpentine receptor class alpha-28.	Serpentine Receptor, class BC (Class B-like).	0.690