(37 nodes) Mixed, incl. Lustrin, cysteine-rich repeated, and Trypsin-like serine protease network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C05D11.1	Uncharacterized protein C05D11.1. (995 aa)
	try-3	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (313 aa)
	C53A5.13	Uncharacterized protein. (681 aa)
	E01G6.3	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family. (588 aa)
	F09B12.5	Uncharacterized protein. (384 aa)
	F13E9.8	DUF148 domain-containing protein. (213 aa)
	F23H11.6	Uncharacterized protein. (292 aa)
	F25E5.16	BTB domain-containing protein. (365 aa)
	F25E5.3	Uncharacterized protein. (377 aa)
	F25E5.4	Peptidase S1 domain-containing protein. (425 aa)
	F25E5.7	Uncharacterized protein. (379 aa)
	F33H1.4	Uncharacterized protein. (1378 aa)
	try-6	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (343 aa)
	col-9	Col_cuticle_N domain-containing protein. (339 aa)
	K01C8.2	Uncharacterized protein. (389 aa)
	K09F6.10	Uncharacterized protein. (383 aa)
	K12G11.6	BPTI/Kunitz inhibitor domain-containing protein. (186 aa)
	M117.4	Uncharacterized protein. (662 aa)
	M7.8	Uncharacterized protein. (230 aa)
	R05H10.7	Uncharacterized protein. (226 aa)
	T08G5.15	DUF19 domain-containing protein. (231 aa)
	T10B5.4	N-acetyltransferase domain-containing protein. (237 aa)
	T21D12.14	Uncharacterized protein. (110 aa)
	T21D12.7	Uncharacterized protein. (661 aa)
	T22F7.3	Uncharacterized protein. (1074 aa)
	T22F7.5	Uncharacterized protein. (462 aa)
	T24E12.10	Uncharacterized protein. (1318 aa)
	W02D7.5	Uncharacterized protein. (232 aa)
	W05B2.2	Uncharacterized protein. (1278 aa)
	Y39B6A.8	Uncharacterized protein. (426 aa)
	Y43F8B.3	Uncharacterized protein. (1658 aa)
	Y4C6B.1	Uncharacterized protein. (442 aa)
	Y55F3BR.11	Uncharacterized protein. (125 aa)
	Y55F3BR.2	Uncharacterized protein. (1549 aa)
	Y57A10A.24	Uncharacterized protein. (534 aa)
	ZC84.1	Uncharacterized protein ZC84.1. (1561 aa)
	try-1	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family. (293 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C05D11.1	T21D12.14	C05D11.1.1	T21D12.14.1	Uncharacterized protein C05D11.1.	Uncharacterized protein.	0.457
C05D11.1	Y55F3BR.11	C05D11.1.1	Y55F3BR.11.1	Uncharacterized protein C05D11.1.	Uncharacterized protein.	0.457
E01G6.3	T22F7.3	E01G6.3.1	T22F7.3.1	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.	Uncharacterized protein.	0.888
E01G6.3	Y43F8B.3	E01G6.3.1	Y43F8B.3d.1	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.	Uncharacterized protein.	0.666
E01G6.3	Y55F3BR.2	E01G6.3.1	Y55F3BR.2a.2	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.	Uncharacterized protein.	0.662
E01G6.3	ZC84.1	E01G6.3.1	ZC84.1.1	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.	Uncharacterized protein ZC84.1.	0.892
E01G6.3	col-9	E01G6.3.1	F54B11.1.1	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.	Col_cuticle_N domain-containing protein.	0.669
F25E5.3	F25E5.7	F25E5.3.1	F25E5.7.1	Uncharacterized protein.	Uncharacterized protein.	0.668
F25E5.3	try-1	F25E5.3.1	ZK546.15.1	Uncharacterized protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.745
F25E5.3	try-3	F25E5.3.1	C43G2.5a.1	Uncharacterized protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.758
F25E5.4	try-1	F25E5.4.1	ZK546.15.1	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.745
F25E5.4	try-3	F25E5.4.1	C43G2.5a.1	Peptidase S1 domain-containing protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.758
F25E5.7	F25E5.3	F25E5.7.1	F25E5.3.1	Uncharacterized protein.	Uncharacterized protein.	0.668
F25E5.7	try-1	F25E5.7.1	ZK546.15.1	Uncharacterized protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.745
F25E5.7	try-3	F25E5.7.1	C43G2.5a.1	Uncharacterized protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.758
F25E5.7	try-6	F25E5.7.1	F48A9.3.1	Uncharacterized protein.	Peptidase S1 domain-containing protein; Belongs to the peptidase S1 family.	0.803
T21D12.14	C05D11.1	T21D12.14.1	C05D11.1.1	Uncharacterized protein.	Uncharacterized protein C05D11.1.	0.457
T22F7.3	E01G6.3	T22F7.3.1	E01G6.3.1	Uncharacterized protein.	Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.	0.888
T22F7.3	T22F7.5	T22F7.3.1	T22F7.5.1	Uncharacterized protein.	Uncharacterized protein.	0.829
T22F7.3	col-9	T22F7.3.1	F54B11.1.1	Uncharacterized protein.	Col_cuticle_N domain-containing protein.	0.700