STRINGSTRING
tofu-1 tofu-1 tofu-2 tofu-2 prde-1 prde-1 tofu-4 tofu-4 tofu-5 tofu-5 tofu-7 tofu-7
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tofu-1Twenty One u-rna (21U-RNA) biogenesis Fouled Up. (373 aa)
tofu-2B30.2/SPRY domain-containing protein. (433 aa)
prde-1piRNA biogenesis factor prde-1; Nuclear factor required for the production of piwi- interacting RNA (piRNA) precursors. Specifically required for piRNAs produced from loci associated with the Ruby motif. Promotes binding of the transcription factor snpc-4 at piRNA genomic clusters. Required for normal fertility. (526 aa)
tofu-4Twenty One u-rna (21U-RNA) biogenesis Fouled Up. (412 aa)
tofu-5Twenty One u-rna (21U-RNA) biogenesis Fouled Up. (311 aa)
tofu-7Twenty One u-rna (21U-RNA) biogenesis Fouled Up. (279 aa)
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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