(7 nodes) Mixed, incl. Oxaloacetate metabolic process, and Mitochondrial outer membrane network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	C01G10.7	HpcH_HpaI domain-containing protein. (324 aa)
	C24D10.4	Uncharacterized protein. (233 aa)
	D1007.8	Uncharacterized protein. (259 aa)
	F54D10.5	Uncharacterized protein. (235 aa)
	K03H1.7	Uncharacterized protein. (88 aa)
	K05C4.7	Armadillo repeat-containing protein 1. (289 aa)
	ZK1067.3	Uncharacterized protein. (399 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C01G10.7	C24D10.4	C01G10.7.2	C24D10.4.1	HpcH_HpaI domain-containing protein.	Uncharacterized protein.	0.821
C01G10.7	D1007.8	C01G10.7.2	D1007.8.2	HpcH_HpaI domain-containing protein.	Uncharacterized protein.	0.739
C01G10.7	F54D10.5	C01G10.7.2	F54D10.5.2	HpcH_HpaI domain-containing protein.	Uncharacterized protein.	0.817
C01G10.7	K03H1.7	C01G10.7.2	K03H1.7.1	HpcH_HpaI domain-containing protein.	Uncharacterized protein.	0.706
C01G10.7	K05C4.7	C01G10.7.2	K05C4.7.1	HpcH_HpaI domain-containing protein.	Armadillo repeat-containing protein 1.	0.738
C01G10.7	ZK1067.3	C01G10.7.2	ZK1067.3.1	HpcH_HpaI domain-containing protein.	Uncharacterized protein.	0.721
C24D10.4	C01G10.7	C24D10.4.1	C01G10.7.2	Uncharacterized protein.	HpcH_HpaI domain-containing protein.	0.821
C24D10.4	D1007.8	C24D10.4.1	D1007.8.2	Uncharacterized protein.	Uncharacterized protein.	0.719
C24D10.4	F54D10.5	C24D10.4.1	F54D10.5.2	Uncharacterized protein.	Uncharacterized protein.	0.809
C24D10.4	K03H1.7	C24D10.4.1	K03H1.7.1	Uncharacterized protein.	Uncharacterized protein.	0.712
C24D10.4	K05C4.7	C24D10.4.1	K05C4.7.1	Uncharacterized protein.	Armadillo repeat-containing protein 1.	0.720
C24D10.4	ZK1067.3	C24D10.4.1	ZK1067.3.1	Uncharacterized protein.	Uncharacterized protein.	0.722
D1007.8	C01G10.7	D1007.8.2	C01G10.7.2	Uncharacterized protein.	HpcH_HpaI domain-containing protein.	0.739
D1007.8	C24D10.4	D1007.8.2	C24D10.4.1	Uncharacterized protein.	Uncharacterized protein.	0.719
D1007.8	F54D10.5	D1007.8.2	F54D10.5.2	Uncharacterized protein.	Uncharacterized protein.	0.808
D1007.8	K03H1.7	D1007.8.2	K03H1.7.1	Uncharacterized protein.	Uncharacterized protein.	0.714
D1007.8	K05C4.7	D1007.8.2	K05C4.7.1	Uncharacterized protein.	Armadillo repeat-containing protein 1.	0.714
D1007.8	ZK1067.3	D1007.8.2	ZK1067.3.1	Uncharacterized protein.	Uncharacterized protein.	0.722
F54D10.5	C01G10.7	F54D10.5.2	C01G10.7.2	Uncharacterized protein.	HpcH_HpaI domain-containing protein.	0.817
F54D10.5	C24D10.4	F54D10.5.2	C24D10.4.1	Uncharacterized protein.	Uncharacterized protein.	0.809