(6 nodes) Mixed, incl. PIN domain, and Metabolism of polyamines network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B0261.7	Uncharacterized protein. (351 aa)
	C08F8.3	Uncharacterized protein. (415 aa)
	C18E3.9	Uncharacterized protein. (302 aa)
	C28A5.1	Uncharacterized protein. (1223 aa)
	C48B4.11	Uncharacterized protein C48B4.11. (307 aa)
	ZK1248.15	WW domain-containing protein. (471 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0261.7	C08F8.3	B0261.7.1	C08F8.3b.1	Uncharacterized protein.	Uncharacterized protein.	0.798
B0261.7	C18E3.9	B0261.7.1	C18E3.9b.1	Uncharacterized protein.	Uncharacterized protein.	0.750
B0261.7	C28A5.1	B0261.7.1	C28A5.1.1	Uncharacterized protein.	Uncharacterized protein.	0.761
B0261.7	C48B4.11	B0261.7.1	C48B4.11.1	Uncharacterized protein.	Uncharacterized protein C48B4.11.	0.849
B0261.7	ZK1248.15	B0261.7.1	ZK1248.15.1	Uncharacterized protein.	WW domain-containing protein.	0.740
C08F8.3	B0261.7	C08F8.3b.1	B0261.7.1	Uncharacterized protein.	Uncharacterized protein.	0.798
C08F8.3	C18E3.9	C08F8.3b.1	C18E3.9b.1	Uncharacterized protein.	Uncharacterized protein.	0.758
C08F8.3	C28A5.1	C08F8.3b.1	C28A5.1.1	Uncharacterized protein.	Uncharacterized protein.	0.787
C08F8.3	C48B4.11	C08F8.3b.1	C48B4.11.1	Uncharacterized protein.	Uncharacterized protein C48B4.11.	0.762
C08F8.3	ZK1248.15	C08F8.3b.1	ZK1248.15.1	Uncharacterized protein.	WW domain-containing protein.	0.734
C18E3.9	B0261.7	C18E3.9b.1	B0261.7.1	Uncharacterized protein.	Uncharacterized protein.	0.750
C18E3.9	C08F8.3	C18E3.9b.1	C08F8.3b.1	Uncharacterized protein.	Uncharacterized protein.	0.758
C18E3.9	C28A5.1	C18E3.9b.1	C28A5.1.1	Uncharacterized protein.	Uncharacterized protein.	0.741
C18E3.9	C48B4.11	C18E3.9b.1	C48B4.11.1	Uncharacterized protein.	Uncharacterized protein C48B4.11.	0.751
C18E3.9	ZK1248.15	C18E3.9b.1	ZK1248.15.1	Uncharacterized protein.	WW domain-containing protein.	0.822
C28A5.1	B0261.7	C28A5.1.1	B0261.7.1	Uncharacterized protein.	Uncharacterized protein.	0.761
C28A5.1	C08F8.3	C28A5.1.1	C08F8.3b.1	Uncharacterized protein.	Uncharacterized protein.	0.787
C28A5.1	C18E3.9	C28A5.1.1	C18E3.9b.1	Uncharacterized protein.	Uncharacterized protein.	0.741
C28A5.1	C48B4.11	C28A5.1.1	C48B4.11.1	Uncharacterized protein.	Uncharacterized protein C48B4.11.	0.741
C28A5.1	ZK1248.15	C28A5.1.1	ZK1248.15.1	Uncharacterized protein.	WW domain-containing protein.	0.734