(26 nodes) Cytosolic large ribosomal subunit, and Cytosolic small ribosomal subunit network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rpl-4	60S ribosomal protein L4; Belongs to the universal ribosomal protein uL4 family. (345 aa)
	rpl-38	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (70 aa)
	rpl-19	60S ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (198 aa)
	rpl-21	60S ribosomal protein L21; Belongs to the eukaryotic ribosomal protein eL21 family. (161 aa)
	rpl-34	Ribosomal Protein, Large subunit. (110 aa)
	rpl-27	60S ribosomal protein L27; Component of the large ribosomal subunit. (136 aa)
	rpl-24.1	60S ribosomal protein L24; Belongs to the eukaryotic ribosomal protein eL24 family. (159 aa)
	rps-10	S10_plectin domain-containing protein. (149 aa)
	rpl-20	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (180 aa)
	rpl-26	60S ribosomal protein L26. (142 aa)
	rpl-36	60S ribosomal protein L36; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL36 family. (104 aa)
	rps-14	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (152 aa)
	rps-26	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (117 aa)
	rps-8	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (208 aa)
	rps-1	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (257 aa)
	rpl-12	60S ribosomal protein L12; Binds directly to 26S ribosomal RNA; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	rpl-15	60S ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	rpl-16	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (202 aa)
	rpl-6	60S ribosomal protein L6; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL6 family. (217 aa)
	rps-19	40S ribosomal protein S19; Belongs to the eukaryotic ribosomal protein eS19 family. (146 aa)
	rps-28	40S ribosomal protein S28; Belongs to the eukaryotic ribosomal protein eS28 family. (65 aa)
	rpl-43	60S ribosomal protein L37a; Belongs to the eukaryotic ribosomal protein eL43 family. (91 aa)
	rps-18	Ribosomal Protein, Small subunit; Belongs to the universal ribosomal protein uS13 family. (154 aa)
	rps-6	40S ribosomal protein S6; May play an important role in controlling cell growth and proliferation through the selective translation of particular classes of mRNA (By similarity). Negatively regulates lifespan ; Belongs to the eukaryotic ribosomal protein eS6 family. (246 aa)
	rpl-1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family. (216 aa)
	rpl-35	60S ribosomal protein L35; Belongs to the universal ribosomal protein uL29 family. (123 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rpl-1	rpl-12	Y71F9AL.13a.2	JC8.3a.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L12; Binds directly to 26S ribosomal RNA; Belongs to the universal ribosomal protein uL11 family.	0.999
rpl-1	rpl-15	Y71F9AL.13a.2	K11H12.2.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
rpl-1	rpl-16	Y71F9AL.13a.2	M01F1.2.2	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family.	0.999
rpl-1	rpl-19	Y71F9AL.13a.2	C09D4.5.2	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
rpl-1	rpl-20	Y71F9AL.13a.2	E04A4.8.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
rpl-1	rpl-21	Y71F9AL.13a.2	C14B9.7.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L21; Belongs to the eukaryotic ribosomal protein eL21 family.	0.999
rpl-1	rpl-24.1	Y71F9AL.13a.2	D1007.12.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L24; Belongs to the eukaryotic ribosomal protein eL24 family.	0.999
rpl-1	rpl-26	Y71F9AL.13a.2	F28C6.7a.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L26.	0.999
rpl-1	rpl-27	Y71F9AL.13a.2	C53H9.1.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L27; Component of the large ribosomal subunit.	0.999
rpl-1	rpl-34	Y71F9AL.13a.2	C42C1.14.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	Ribosomal Protein, Large subunit.	0.999
rpl-1	rpl-35	Y71F9AL.13a.2	ZK652.4.3	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L35; Belongs to the universal ribosomal protein uL29 family.	0.999
rpl-1	rpl-36	Y71F9AL.13a.2	F37C12.4.2	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L36; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL36 family.	0.999
rpl-1	rpl-38	Y71F9AL.13a.2	C06B8.8.6	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.999
rpl-1	rpl-4	Y71F9AL.13a.2	B0041.4.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L4; Belongs to the universal ribosomal protein uL4 family.	0.999
rpl-1	rpl-43	Y71F9AL.13a.2	Y48B6A.2.3	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L37a; Belongs to the eukaryotic ribosomal protein eL43 family.	0.999
rpl-1	rpl-6	Y71F9AL.13a.2	R151.3.4	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	60S ribosomal protein L6; Component of the large ribosomal subunit. Belongs to the eukaryotic ribosomal protein eL6 family.	0.999
rpl-1	rps-1	Y71F9AL.13a.2	F56F3.5.2	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
rpl-1	rps-10	Y71F9AL.13a.2	D1007.6.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	S10_plectin domain-containing protein.	0.999
rpl-1	rps-14	Y71F9AL.13a.2	F37C12.9.2	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.	0.999
rpl-1	rps-18	Y71F9AL.13a.2	Y57G11C.16.1	60S ribosomal protein L10a; Belongs to the universal ribosomal protein uL1 family.	Ribosomal Protein, Small subunit; Belongs to the universal ribosomal protein uS13 family.	0.999