5 items (Caenorhabditis elegans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	mrps-9	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family. (392 aa)
	mrps-16	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family. (147 aa)
	mrps-15	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family. (330 aa)
	mrps-14	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family. (199 aa)
	mrps-12	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family. (157 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mrps-12	mrps-14	T03D8.2.1	T01E8.6.1	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family.	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family.	0.999
mrps-12	mrps-15	T03D8.2.1	K07A12.7.1	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family.	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	0.999
mrps-12	mrps-16	T03D8.2.1	F56D1.3.1	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family.	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family.	0.999
mrps-12	mrps-9	T03D8.2.1	F09G8.3.1	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family.	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	0.999
mrps-14	mrps-12	T01E8.6.1	T03D8.2.1	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family.	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family.	0.999
mrps-14	mrps-15	T01E8.6.1	K07A12.7.1	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family.	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	0.999
mrps-14	mrps-16	T01E8.6.1	F56D1.3.1	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family.	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family.	0.999
mrps-14	mrps-9	T01E8.6.1	F09G8.3.1	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family.	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	0.999
mrps-15	mrps-12	K07A12.7.1	T03D8.2.1	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family.	0.999
mrps-15	mrps-14	K07A12.7.1	T01E8.6.1	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family.	0.999
mrps-15	mrps-16	K07A12.7.1	F56D1.3.1	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family.	0.999
mrps-15	mrps-9	K07A12.7.1	F09G8.3.1	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	0.999
mrps-16	mrps-12	F56D1.3.1	T03D8.2.1	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family.	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family.	0.999
mrps-16	mrps-14	F56D1.3.1	T01E8.6.1	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family.	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family.	0.999
mrps-16	mrps-15	F56D1.3.1	K07A12.7.1	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family.	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	0.999
mrps-16	mrps-9	F56D1.3.1	F09G8.3.1	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family.	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	0.999
mrps-9	mrps-12	F09G8.3.1	T03D8.2.1	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	Mitochondrial Ribosomal Protein, Small; Belongs to the universal ribosomal protein uS12 family.	0.999
mrps-9	mrps-14	F09G8.3.1	T01E8.6.1	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	Probable 40S ribosomal protein S14, mitochondrial; Belongs to the universal ribosomal protein uS14 family.	0.999
mrps-9	mrps-15	F09G8.3.1	K07A12.7.1	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	28S ribosomal protein S15, mitochondrial; Belongs to the universal ribosomal protein uS15 family.	0.999
mrps-9	mrps-16	F09G8.3.1	F56D1.3.1	Probable 40S ribosomal protein S9, mitochondrial; Belongs to the universal ribosomal protein uS9 family.	Probable 28S ribosomal protein S16, mitochondrial; Belongs to the bacterial ribosomal protein bS16 family.	0.999