(11 nodes) Mixed, incl. Beta-ketoacyl synthase, N-terminal, and Protein phosphopantetheinylation network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	pks-1	PolyKetide Synthase. (7752 aa)
	C50D2.9	PKS_AT domain-containing protein. (405 aa)
	F10G8.9	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family. (403 aa)
	fasn-1	Carrier domain-containing protein. (2613 aa)
	F32H2.6	Ketoacyl_synth_N domain-containing protein. (187 aa)
	mlcd-1	MaLonyl CoA Decarboxylase. (442 aa)
	F37C12.3	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. (145 aa)
	T04G9.4	ACPS domain-containing protein. (297 aa)
	T28H10.1	ACPS domain-containing protein. (285 aa)
	pod-2	Uncharacterized protein. (2165 aa)
	W09D6.1	AMP-binding domain-containing protein. (889 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C50D2.9	F10G8.9	C50D2.9.1	F10G8.9b.1	PKS_AT domain-containing protein.	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	0.999
C50D2.9	F32H2.6	C50D2.9.1	F32H2.6.1	PKS_AT domain-containing protein.	Ketoacyl_synth_N domain-containing protein.	0.740
C50D2.9	F37C12.3	C50D2.9.1	F37C12.3.2	PKS_AT domain-containing protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.970
C50D2.9	T04G9.4	C50D2.9.1	T04G9.4.1	PKS_AT domain-containing protein.	ACPS domain-containing protein.	0.748
C50D2.9	T28H10.1	C50D2.9.1	T28H10.1.1	PKS_AT domain-containing protein.	ACPS domain-containing protein.	0.748
C50D2.9	W09D6.1	C50D2.9.1	W09D6.1c.1	PKS_AT domain-containing protein.	AMP-binding domain-containing protein.	0.458
C50D2.9	fasn-1	C50D2.9.1	F32H2.5.1	PKS_AT domain-containing protein.	Carrier domain-containing protein.	0.972
C50D2.9	mlcd-1	C50D2.9.1	F35G12.1a.1	PKS_AT domain-containing protein.	MaLonyl CoA Decarboxylase.	0.848
C50D2.9	pks-1	C50D2.9.1	C41A3.1a.1	PKS_AT domain-containing protein.	PolyKetide Synthase.	0.930
C50D2.9	pod-2	C50D2.9.1	W09B6.1c.1	PKS_AT domain-containing protein.	Uncharacterized protein.	0.968
F10G8.9	C50D2.9	F10G8.9b.1	C50D2.9.1	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	PKS_AT domain-containing protein.	0.999
F10G8.9	F32H2.6	F10G8.9b.1	F32H2.6.1	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Ketoacyl_synth_N domain-containing protein.	0.821
F10G8.9	F37C12.3	F10G8.9b.1	F37C12.3.2	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.975
F10G8.9	T04G9.4	F10G8.9b.1	T04G9.4.1	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	ACPS domain-containing protein.	0.658
F10G8.9	T28H10.1	F10G8.9b.1	T28H10.1.1	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	ACPS domain-containing protein.	0.739
F10G8.9	W09D6.1	F10G8.9b.1	W09D6.1c.1	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	AMP-binding domain-containing protein.	0.717
F10G8.9	fasn-1	F10G8.9b.1	F32H2.5.1	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Carrier domain-containing protein.	0.946
F10G8.9	pks-1	F10G8.9b.1	C41A3.1a.1	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	PolyKetide Synthase.	0.811
F10G8.9	pod-2	F10G8.9b.1	W09B6.1c.1	PKS_KS domain-containing protein; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.	Uncharacterized protein.	0.752
F32H2.6	C50D2.9	F32H2.6.1	C50D2.9.1	Ketoacyl_synth_N domain-containing protein.	PKS_AT domain-containing protein.	0.740