Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| W08E3.2 | ncbp-1 | W08E3.2.1 | F37E3.1.1 | Btz domain-containing protein. | Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-1 does not bind directly capped RNAs (m7GpppG- capped RNA) but is required to stabilize the movement of the N-terminal loop of ncbp-2 and lock the CBC into a high affinity cap-binding state with the c [...] | 0.700 |
| W08E3.2 | smg-1 | W08E3.2.1 | C48B6.6a.1 | Btz domain-containing protein. | Serine/threonine-protein kinase smg-1; Serine/threonine protein kinase involved in mRNA surveillance. Recognizes the substrate consensus sequence [ST]-Q. Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons by phosphorylating smg-2. | 0.573 |
| W08E3.2 | smg-2 | W08E3.2.1 | Y48G8AL.6.2 | Btz domain-containing protein. | Regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an smg-2-3-4 surveillance complex is believed to activate NMD (By similarity). | 0.978 |
| W08E3.2 | smg-3 | W08E3.2.1 | Y73B6BL.18b.1 | Btz domain-containing protein. | Suppressor with Morphological effect on Genitalia. | 0.852 |
| W08E3.2 | smg-4 | W08E3.2.1 | F46B6.3b.1 | Btz domain-containing protein. | Smg4_UPF3 domain-containing protein. | 0.960 |
| W08E3.2 | smg-5 | W08E3.2.1 | W02D3.8.1 | Btz domain-containing protein. | Nonsense-mediated mRNA decay protein. | 0.479 |
| W08E3.2 | smg-6 | W08E3.2.1 | Y54F10AL.2a.1 | Btz domain-containing protein. | PINc domain-containing protein. | 0.754 |
| W08E3.2 | smg-8 | W08E3.2.1 | K04B12.3a.1 | Btz domain-containing protein. | Protein smg-8; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing smg-1 and recruited to stalled ribosomes. Belongs to the SMG8 family. | 0.514 |
| W08E3.2 | smg-9 | W08E3.2.1 | Y54E2A.2.1 | Btz domain-containing protein. | Protein smg-9; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing smg-1 and recruited to stalled ribosomes. Belongs to the SMG9 family. | 0.536 |
| dcap-1 | dcap-2 | Y55F3AM.12.1 | F52G2.1b.1 | mRNA_decap_C domain-containing protein. | mRNA-decapping enzyme 2; RNA-decapping enzyme although it does not bind cap. May contribute to gene regulation in multiple RNA pathways including monomethylguanosine- and trimethylguanosine-capped RNAs. Belongs to the Nudix hydrolase family. DCP2 subfamily. | 0.999 |
| dcap-1 | smg-2 | Y55F3AM.12.1 | Y48G8AL.6.2 | mRNA_decap_C domain-containing protein. | Regulator of nonsense transcripts 1; RNA-dependent helicase and ATPase required for nonsense- mediated decay (NMD) of mRNAs containing premature stop codons. Is recruited to mRNAs upon translation termination and undergoes a cycle of phosphorylation and dephosphorylation; its phosphorylation appears to be a key step in NMD. The formation of an smg-2-3-4 surveillance complex is believed to activate NMD (By similarity). | 0.882 |
| dcap-1 | smg-3 | Y55F3AM.12.1 | Y73B6BL.18b.1 | mRNA_decap_C domain-containing protein. | Suppressor with Morphological effect on Genitalia. | 0.453 |
| dcap-1 | smg-4 | Y55F3AM.12.1 | F46B6.3b.1 | mRNA_decap_C domain-containing protein. | Smg4_UPF3 domain-containing protein. | 0.526 |
| dcap-1 | smg-5 | Y55F3AM.12.1 | W02D3.8.1 | mRNA_decap_C domain-containing protein. | Nonsense-mediated mRNA decay protein. | 0.511 |
| dcap-1 | smg-6 | Y55F3AM.12.1 | Y54F10AL.2a.1 | mRNA_decap_C domain-containing protein. | PINc domain-containing protein. | 0.520 |
| dcap-1 | smg-8 | Y55F3AM.12.1 | K04B12.3a.1 | mRNA_decap_C domain-containing protein. | Protein smg-8; Involved in nonsense-mediated decay (NMD) of mRNAs containing premature stop codons. Probable component of kinase complex containing smg-1 and recruited to stalled ribosomes. Belongs to the SMG8 family. | 0.580 |
| dcap-1 | tiar-1 | Y55F3AM.12.1 | C18A3.5a.1 | mRNA_decap_C domain-containing protein. | RRM domain-containing protein. | 0.693 |
| dcap-1 | tiar-2 | Y55F3AM.12.1 | Y46G5A.13.1 | mRNA_decap_C domain-containing protein. | TIA-1/TIAL RNA binding protein homolog. | 0.769 |
| dcap-2 | dcap-1 | F52G2.1b.1 | Y55F3AM.12.1 | mRNA-decapping enzyme 2; RNA-decapping enzyme although it does not bind cap. May contribute to gene regulation in multiple RNA pathways including monomethylguanosine- and trimethylguanosine-capped RNAs. Belongs to the Nudix hydrolase family. DCP2 subfamily. | mRNA_decap_C domain-containing protein. | 0.999 |
| dcap-2 | ncbp-1 | F52G2.1b.1 | F37E3.1.1 | mRNA-decapping enzyme 2; RNA-decapping enzyme although it does not bind cap. May contribute to gene regulation in multiple RNA pathways including monomethylguanosine- and trimethylguanosine-capped RNAs. Belongs to the Nudix hydrolase family. DCP2 subfamily. | Nuclear cap-binding protein subunit 1; Component of the cap-binding complex (CBC), which binds cotranscriptionally to the 5'-cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-1 does not bind directly capped RNAs (m7GpppG- capped RNA) but is required to stabilize the movement of the N-terminal loop of ncbp-2 and lock the CBC into a high affinity cap-binding state with the c [...] | 0.605 |
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