(7 nodes) Chitinase activity network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	T26F2.1	Uncharacterized protein. (453 aa)
	T05H4.7	Uncharacterized protein. (511 aa)
	R10D12.15	Uncharacterized protein. (455 aa)
	cht-3	Chitinase-like protein C25A8.4; Putative chitinase; Belongs to the glycosyl hydrolase 18 family. (1067 aa)
	C08B6.4	Uncharacterized protein. (484 aa)
	cht-1	Probable endochitinase. (617 aa)
	cht-4	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (360 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
C08B6.4	cht-4	C08B6.4b.1	Y22D7AL.14.1	Uncharacterized protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.461
T05H4.7	cht-1	T05H4.7.1	C04F6.3.1	Uncharacterized protein.	Probable endochitinase.	0.691
T05H4.7	cht-4	T05H4.7.1	Y22D7AL.14.1	Uncharacterized protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.706
cht-1	T05H4.7	C04F6.3.1	T05H4.7.1	Probable endochitinase.	Uncharacterized protein.	0.691
cht-1	cht-4	C04F6.3.1	Y22D7AL.14.1	Probable endochitinase.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.917
cht-4	C08B6.4	Y22D7AL.14.1	C08B6.4b.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Uncharacterized protein.	0.461
cht-4	T05H4.7	Y22D7AL.14.1	T05H4.7.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Uncharacterized protein.	0.706
cht-4	cht-1	Y22D7AL.14.1	C04F6.3.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Probable endochitinase.	0.917