STRINGSTRING
B0336.13 B0336.13 gtf-2F1 gtf-2F1 taf-5 taf-5 taf-11.3 taf-11.3 rpb-4 rpb-4 taf-11.1 taf-11.1 dro-1 dro-1 gtf-2E2 gtf-2E2 taf-7.1 taf-7.1 taf-10 taf-10 taf-11.2 taf-11.2 pqn-51 pqn-51 taf-4 taf-4 taf-9 taf-9 ttb-1 ttb-1 taf-1 taf-1 taf-6.1 taf-6.1 gtf-2A2 gtf-2A2 taf-7.2 taf-7.2 taf-6.2 taf-6.2 taf-2 taf-2 gtf-2F2 gtf-2F2 rpb-7 rpb-7 gtf-2H5 gtf-2H5 taf-12 taf-12 xpb-1 xpb-1 rpb-9 rpb-9 taf-8 taf-8 gtf-2E1 gtf-2E1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
B0336.13Transcription initiation factor IIA small chain homolog. (139 aa)
gtf-2F1Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (481 aa)
taf-5TAF (TBP-associated transcription factor) family. (648 aa)
taf-11.3TAFII28 domain-containing protein. (228 aa)
rpb-4RPOL4c domain-containing protein. (144 aa)
taf-11.1TAFII28 domain-containing protein. (345 aa)
dro-1CBFD_NFYB_HMF domain-containing protein. (184 aa)
gtf-2E2Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (289 aa)
taf-7.1TAFII55_N domain-containing protein. (254 aa)
taf-10Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family. (179 aa)
taf-11.2TAFII28 domain-containing protein. (281 aa)
pqn-51Prion-like-(Q/N-rich)-domain-bearing protein. (354 aa)
taf-4TAFH domain-containing protein. (523 aa)
taf-9TAF (TBP-associated transcription factor) family. (183 aa)
ttb-1Transcription initiation factor IIB; General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II. (306 aa)
taf-1Transcription initiation factor TFIID subunit 1; Component of general transcription factor TFIID which establishes the initiation site for mRNA transcription (By similarity). May regulate RNA polymerase II activity and thereby may control transcription initiation by RNA polymerase II. Required for early embryonic development. Essential for embryonic transcription of several genes. (1744 aa)
taf-6.1TAF domain-containing protein. (470 aa)
gtf-2A2Transcription initiation factor IIA subunit 2; TFIIA is a component of the transcription machinery of RNA polymerase II and plays an important role in transcriptional activation. TFIIA in a complex with TBP mediates transcriptional activity. (113 aa)
taf-7.2TAFII55_N domain-containing protein. (236 aa)
taf-6.2TAF6_C domain-containing protein. (835 aa)
taf-2Transcription initiation factor TFIID subunit 2; Component of general transcription factor TFIID which establishes the initiation site for mRNA transcription (By similarity). May regulate RNA polymerase II activity and thereby may control transcription initiation by RNA polymerase II. Belongs to the TAF2 family. (1092 aa)
gtf-2F2General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (263 aa)
rpb-7S1 motif domain-containing protein. (197 aa)
gtf-2H5General Transcription Factor homolog. (71 aa)
taf-12TFIID_20kDa domain-containing protein. (342 aa)
xpb-1XPB (Xeroderma Pigmentosum complementation group B) related. (789 aa)
rpb-9TFIIS-type domain-containing protein; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (167 aa)
taf-8BTP domain-containing protein. (497 aa)
gtf-2E1HTH TFE/IIEalpha-type domain-containing protein. (433 aa)
Your Current Organism:
Caenorhabditis elegans
NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm
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