Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| K11D12.11 | spon-1 | K11D12.11.1 | F10E7.4.1 | BPTI/Kunitz inhibitor domain-containing protein. | SPONdin (Extracellular matrix glycoprotein) family. | 0.532 |
| agr-1 | cle-1 | F41G3.12.1 | C36B1.1d.1 | AGRin (Synaptic protein) homolog family member. | CoLlagen with Endostatin domain. | 0.859 |
| agr-1 | emb-9 | F41G3.12.1 | K04H4.1a.1 | AGRin (Synaptic protein) homolog family member. | Collagen alpha-1(IV) chain; Collagen type IV is specific for basement membranes (Probable). Required to restrict presynaptic growth at the neuromuscular junctions (NMJ) in late larval stage and in adult motor neurons. May play a role in axon regeneration in embryos following injury in D-type motor neurons. | 0.472 |
| agr-1 | fbl-1 | F41G3.12.1 | F56H11.1g.1 | AGRin (Synaptic protein) homolog family member. | Fibulin-1; Incorporated into fibronectin-containing matrix fibers. Plays a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Important for certain developmental processes and contributes to the supramolecular organization of ECM architecture, in particular to those of basement membranes. [Isoform c]: Involved in the assembly of the flexible hemicentin-containing tracks found joining the pharynx and body-wall- muscle basement membranes; Belongs to the fibulin family. | 0.729 |
| agr-1 | him-4 | F41G3.12.1 | F15G9.4d.1 | AGRin (Synaptic protein) homolog family member. | EGF-like domain-containing protein. | 0.490 |
| agr-1 | lam-1 | F41G3.12.1 | W03F8.5a.1 | AGRin (Synaptic protein) homolog family member. | LAMinin related. See also lmb. | 0.632 |
| agr-1 | lam-3 | F41G3.12.1 | T22A3.8.1 | AGRin (Synaptic protein) homolog family member. | LAMinin related. See also lmb. | 0.450 |
| agr-1 | mig-6 | F41G3.12.1 | C37C3.6b.1 | AGRin (Synaptic protein) homolog family member. | Papilin; Involved in pharynx morphogenesis probably by remodeling the basement membrane. [Isoform b]: Plays a role in post embryonic distal cell tip migration. Essential extracellular matrix (ECM) protein required for hypodermal enclosure in the embryo. | 0.419 |
| agr-1 | nid-1 | F41G3.12.1 | F54F3.1a.1 | AGRin (Synaptic protein) homolog family member. | NIDogen (Basement membrane protein). | 0.760 |
| agr-1 | ost-1 | F41G3.12.1 | C44B12.2a.1 | AGRin (Synaptic protein) homolog family member. | SPARC; Has a high affinity for collagen. Affects nematode body morphology and mobility. Essential for C.elegans development and muscle function. The cysteine-rich region could have protease inhibitory activity or may provide the framework for a protein binding module. Probable role in skeletal morphogenesis; Belongs to the SPARC family. | 0.604 |
| agr-1 | unc-52 | F41G3.12.1 | ZC101.2e.1 | AGRin (Synaptic protein) homolog family member. | Basement membrane proteoglycan; Component of an integrin containing attachment complex, which is required for muscle development and maintenance. Probable structural role in myofilament assembly and/or attachment of the myofilament lattice to the cell membrane. May be an extracellular anchor for integrin receptors in body wall muscles and myoepithelial sheath cells. During the formation of neuromuscular junctions at the larval stage, negatively regulates membrane protrusion from body wall muscles, probably downstream of the integrin complex formed by pat-2 and pat-3. Involved in ovulation. | 0.420 |
| cdh-3 | him-4 | ZK112.7.1 | F15G9.4d.1 | Cadherin-3; Cell adhesion protein involved in the control of epithelial morphogenesis. Together with metalloproteinase zmp-1 and hemicentin him-4, plays a role in anchor cell (AC) invasion during postembryonic vulval development. | EGF-like domain-containing protein. | 0.741 |
| cdh-3 | pat-3 | ZK112.7.1 | ZK1058.2.1 | Cadherin-3; Cell adhesion protein involved in the control of epithelial morphogenesis. Together with metalloproteinase zmp-1 and hemicentin him-4, plays a role in anchor cell (AC) invasion during postembryonic vulval development. | Integrin beta pat-3; Integrin alpha ina-1/beta pat-3 is a receptor for laminin. Integrin alpha pat-2/beta pat-3 recognizes the sequence R-G-D in its ligands (Probable). Plays a role in cell migration, morphogenesis and probably in cell-cell interactions. During gonad morphogenesis, involved in distal tip cell (DTC)-mediated guidance of gonad elongation, in maintaining their sharp tapering morphology and in their migration. Component of an integrin containing attachment complex, which is required for muscle development and maintenance. Involved in the assembly of dense bodies and M line [...] | 0.495 |
| cdh-3 | unc-6 | ZK112.7.1 | F41C6.1.1 | Cadherin-3; Cell adhesion protein involved in the control of epithelial morphogenesis. Together with metalloproteinase zmp-1 and hemicentin him-4, plays a role in anchor cell (AC) invasion during postembryonic vulval development. | Netrin unc-6; Component of an extracellular matrix cue that guides dorsoventral migrations on the epidermis. Required for the guidance of pioneer axons and migrating cells along the body wall. During gonad morphogenesis, involved in distal tip cell (DTC) migration from the dorsal side of the hermaphrodite body to the midbody to allow for formation of gonad arms. Its association with either unc-40 or unc-5 receptors will lead to axon attraction or repulsion, respectively. Involved in the positioning of ray 1, the most anterior ray sensilium, in the male tail. Required for the formation [...] | 0.550 |
| cle-1 | agr-1 | C36B1.1d.1 | F41G3.12.1 | CoLlagen with Endostatin domain. | AGRin (Synaptic protein) homolog family member. | 0.859 |
| cle-1 | emb-9 | C36B1.1d.1 | K04H4.1a.1 | CoLlagen with Endostatin domain. | Collagen alpha-1(IV) chain; Collagen type IV is specific for basement membranes (Probable). Required to restrict presynaptic growth at the neuromuscular junctions (NMJ) in late larval stage and in adult motor neurons. May play a role in axon regeneration in embryos following injury in D-type motor neurons. | 0.416 |
| cle-1 | epi-1 | C36B1.1d.1 | K08C7.3f.1 | CoLlagen with Endostatin domain. | Laminin-like protein epi-1; During the formation of neuromuscular junctions at the larval stage, negatively regulates membrane protrusion from body wall muscles, probably downstream of the integrin complex formed by pat-2 and pat-3. | 0.704 |
| cle-1 | fbl-1 | C36B1.1d.1 | F56H11.1g.1 | CoLlagen with Endostatin domain. | Fibulin-1; Incorporated into fibronectin-containing matrix fibers. Plays a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Important for certain developmental processes and contributes to the supramolecular organization of ECM architecture, in particular to those of basement membranes. [Isoform c]: Involved in the assembly of the flexible hemicentin-containing tracks found joining the pharynx and body-wall- muscle basement membranes; Belongs to the fibulin family. | 0.711 |
| cle-1 | lam-3 | C36B1.1d.1 | T22A3.8.1 | CoLlagen with Endostatin domain. | LAMinin related. See also lmb. | 0.555 |
| cle-1 | let-2 | C36B1.1d.1 | F01G12.5b.1 | CoLlagen with Endostatin domain. | Collagen alpha-2(IV) chain; Collagen type IV is specific for basement membranes (Probable). Together with fbl-1 and downstream of metalloprotease mig- 17, recruits nidogen nid-1 to the gonad basement membrane thereby probably inducing basement membrane remodeling required for the directional migration of distal tip cells. Required to restrict presynaptic growth at the neuromuscular junctions in late larval stage and in adult motor neurons. Vital for embryonic development. | 0.420 |
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