(6 nodes) Interactor of ZYG-11, nematodes network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	W03D8.9	Uncharacterized protein. (319 aa)
	T16A9.5	Uncharacterized protein. (322 aa)
	K06A5.2	Uncharacterized protein. (332 aa)
	Y69E1A.1	Uncharacterized protein. (322 aa)
	Y37D8A.5	Uncharacterized protein. (320 aa)
	F58A6.5	Uncharacterized protein. (298 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
K06A5.2	T16A9.5	K06A5.2.1	T16A9.5.1	Uncharacterized protein.	Uncharacterized protein.	0.999
K06A5.2	W03D8.9	K06A5.2.1	W03D8.9.1	Uncharacterized protein.	Uncharacterized protein.	0.592
K06A5.2	Y37D8A.5	K06A5.2.1	Y37D8A.5.1	Uncharacterized protein.	Uncharacterized protein.	0.947
K06A5.2	Y69E1A.1	K06A5.2.1	Y69E1A.1.1	Uncharacterized protein.	Uncharacterized protein.	0.868
T16A9.5	K06A5.2	T16A9.5.1	K06A5.2.1	Uncharacterized protein.	Uncharacterized protein.	0.999
T16A9.5	W03D8.9	T16A9.5.1	W03D8.9.1	Uncharacterized protein.	Uncharacterized protein.	0.592
T16A9.5	Y37D8A.5	T16A9.5.1	Y37D8A.5.1	Uncharacterized protein.	Uncharacterized protein.	0.999
T16A9.5	Y69E1A.1	T16A9.5.1	Y69E1A.1.1	Uncharacterized protein.	Uncharacterized protein.	0.999
W03D8.9	K06A5.2	W03D8.9.1	K06A5.2.1	Uncharacterized protein.	Uncharacterized protein.	0.592
W03D8.9	T16A9.5	W03D8.9.1	T16A9.5.1	Uncharacterized protein.	Uncharacterized protein.	0.592
W03D8.9	Y37D8A.5	W03D8.9.1	Y37D8A.5.1	Uncharacterized protein.	Uncharacterized protein.	0.461
W03D8.9	Y69E1A.1	W03D8.9.1	Y69E1A.1.1	Uncharacterized protein.	Uncharacterized protein.	0.592
Y37D8A.5	K06A5.2	Y37D8A.5.1	K06A5.2.1	Uncharacterized protein.	Uncharacterized protein.	0.947
Y37D8A.5	T16A9.5	Y37D8A.5.1	T16A9.5.1	Uncharacterized protein.	Uncharacterized protein.	0.999
Y37D8A.5	W03D8.9	Y37D8A.5.1	W03D8.9.1	Uncharacterized protein.	Uncharacterized protein.	0.461
Y37D8A.5	Y69E1A.1	Y37D8A.5.1	Y69E1A.1.1	Uncharacterized protein.	Uncharacterized protein.	0.551
Y69E1A.1	K06A5.2	Y69E1A.1.1	K06A5.2.1	Uncharacterized protein.	Uncharacterized protein.	0.868
Y69E1A.1	T16A9.5	Y69E1A.1.1	T16A9.5.1	Uncharacterized protein.	Uncharacterized protein.	0.999
Y69E1A.1	W03D8.9	Y69E1A.1.1	W03D8.9.1	Uncharacterized protein.	Uncharacterized protein.	0.592
Y69E1A.1	Y37D8A.5	Y69E1A.1.1	Y37D8A.5.1	Uncharacterized protein.	Uncharacterized protein.	0.551