(30 nodes) Chitinase II network (Caenorhabditis elegans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	chil-9	Glyco_18 domain-containing protein. (460 aa)
	cht-1	Probable endochitinase. (617 aa)
	chil-4	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (457 aa)
	chil-5	Glyco_18 domain-containing protein. (459 aa)
	chil-6	Glyco_18 domain-containing protein. (460 aa)
	chil-7	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (482 aa)
	chil-8	Glyco_18 domain-containing protein. (399 aa)
	chil-1	Glyco_18 domain-containing protein. (465 aa)
	chil-2	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (383 aa)
	chil-3	Glyco_18 domain-containing protein. (447 aa)
	cht-3	Chitinase-like protein C25A8.4; Putative chitinase; Belongs to the glycosyl hydrolase 18 family. (1067 aa)
	chil-11	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (389 aa)
	lmd-4	LysM Domain (Peptidoglycan binding) protein. (2011 aa)
	chil-12	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (450 aa)
	chil-13	Glyco_18 domain-containing protein. (439 aa)
	chil-15	Glyco_18 domain-containing protein. (432 aa)
	chil-22	Glyco_18 domain-containing protein. (450 aa)
	chil-23	Glyco_18 domain-containing protein. (432 aa)
	chil-16	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (440 aa)
	chil-17	Glyco_18 domain-containing protein. (435 aa)
	chil-18	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (429 aa)
	chil-19	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (452 aa)
	chil-21	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (470 aa)
	lmd-5	LysM Domain (Peptidoglycan binding) protein. (1518 aa)
	chil-24	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (410 aa)
	cht-2	CHiTinase; Belongs to the glycosyl hydrolase 18 family. (626 aa)
	chil-25	Glyco_18 domain-containing protein. (483 aa)
	chil-26	Glyco_18 domain-containing protein. (345 aa)
	T19H5.6	Glyco_18 domain-containing protein. (286 aa)
	cht-4	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family. (360 aa)

Your Current Organism:

Caenorhabditis elegans

NCBI taxonomy Id: 6239
Other names: C. elegans, Rhabditis elegans, roundworm

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
chil-1	cht-4	C08H9.4b.1	Y22D7AL.14.1	Glyco_18 domain-containing protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.535
chil-11	cht-4	C45E5.2.1	Y22D7AL.14.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.536
chil-12	cht-4	M01B2.6.1	Y22D7AL.14.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.536
chil-19	cht-4	R09D1.6.1	Y22D7AL.14.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.536
chil-2	chil-5	C08H9.6.1	C08H9.11.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein.	0.551
chil-2	cht-4	C08H9.6.1	Y22D7AL.14.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.533
chil-21	cht-4	R09D1.8.1	Y22D7AL.14.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.536
chil-23	cht-4	R09D1.11a.1	Y22D7AL.14.1	Glyco_18 domain-containing protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.535
chil-25	cht-1	T19H5.1b.1	C04F6.3.1	Glyco_18 domain-containing protein.	Probable endochitinase.	0.447
chil-3	cht-4	C08H9.7.1	Y22D7AL.14.1	Glyco_18 domain-containing protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.536
chil-4	cht-4	C08H9.10.1	Y22D7AL.14.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.535
chil-5	chil-2	C08H9.11.1	C08H9.6.1	Glyco_18 domain-containing protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.551
chil-5	cht-4	C08H9.11.1	Y22D7AL.14.1	Glyco_18 domain-containing protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.535
chil-6	cht-4	C08H9.12.1	Y22D7AL.14.1	Glyco_18 domain-containing protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.535
chil-9	cht-4	ZK938.6.1	Y22D7AL.14.1	Glyco_18 domain-containing protein.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.535
cht-1	chil-25	C04F6.3.1	T19H5.1b.1	Probable endochitinase.	Glyco_18 domain-containing protein.	0.447
cht-1	cht-4	C04F6.3.1	Y22D7AL.14.1	Probable endochitinase.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.917
cht-4	chil-1	Y22D7AL.14.1	C08H9.4b.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein.	0.535
cht-4	chil-11	Y22D7AL.14.1	C45E5.2.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.536
cht-4	chil-12	Y22D7AL.14.1	M01B2.6.1	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	Glyco_18 domain-containing protein; Belongs to the glycosyl hydrolase 18 family.	0.536